Locus 6084

Sequence ID 3L_DroMel_CAF1
Location 16,167,647 – 16,167,764
Length 117
Max. P 0.613483
window9776

overview

Window 6

Location 16,167,647 – 16,167,764
Length 117
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 95.76
Mean single sequence MFE -38.62
Consensus MFE -37.70
Energy contribution -37.57
Covariance contribution -0.13
Combinations/Pair 1.06
Mean z-score -1.44
Structure conservation index 0.98
SVM decision value 0.16
SVM RNA-class probability 0.613483
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16167647 117 - 23771897
GCCUGUGGAUGACUUGGCAGCCUUGAUAGCCCUGGGAUUUCACUAAUCGGCAGAUGGGGAUGUGGAGGUAGCCUGAAUUUGUAUUCUAGGUCAUUAGGCGAGCAAAAGCAGGAACAA--
((((...(((((((((((.(((((.(((.((((((.......)).(((....))))))).))).))))).))).((((....)))).))))))))))))..((....))........-- ( -37.70)
>DroSec_CAF1 25327 117 - 1
GCCUGUGGAUGACUUGGCAGCCUUGAUAGCCCUGGGAUUUCACUAAUCGGCAGACGGGGAUGUGGAGGUAGCCUGAAUUUGUAUUCUAGGUCAUUAGGCGAGCAAAAGCAGGAACAA--
((((...(((((((((((.(((((.(((.(((((.((((.....))))......))))).))).))))).))).((((....)))).))))))))))))..((....))........-- ( -39.70)
>DroSim_CAF1 27927 117 - 1
GCCUGUGGAUGACUUGGCAGCCUUGAUAGCCCUGGGAUUUCACUAAUCGGCAGACGGGGAUGUGGAGGUAGCCUGAAUUUGUAUUCUAGGUCAUUAGGCGAGCAAAAGCAGGAGCAA--
((((...(((((((((((.(((((.(((.(((((.((((.....))))......))))).))).))))).))).((((....)))).))))))))))))..((....))........-- ( -39.70)
>DroEre_CAF1 25032 119 - 1
GCCUGUGGAUGACUUGGCAGCCUUGAUAGCCCUGGGAUUUCACUAAUCGGCGGACGGGGGAAUGGAGGUAGCCUGAAUUUGUAUUCUAGGUCAUUAGGCGAGCAAAAACAGCAACAACG
((((...(((((((((((.(((((.((..(((((.((((.....))))......)))))..)).))))).))).((((....)))).))))))))))))..((.......))....... ( -37.40)
>consensus
GCCUGUGGAUGACUUGGCAGCCUUGAUAGCCCUGGGAUUUCACUAAUCGGCAGACGGGGAUGUGGAGGUAGCCUGAAUUUGUAUUCUAGGUCAUUAGGCGAGCAAAAGCAGGAACAA__
((((...(((((((((((.(((((.(((.(((((.((((.....))))......))))).))).))))).))).((((....)))).)))))))))))).................... (-37.70 = -37.57 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:39 2006