Locus 6082

Sequence ID 3L_DroMel_CAF1
Location 16,160,940 – 16,161,060
Length 120
Max. P 0.828575
window9773

overview

Window 3

Location 16,160,940 – 16,161,060
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 98.32
Mean single sequence MFE -34.65
Consensus MFE -34.34
Energy contribution -34.15
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.99
SVM decision value 0.71
SVM RNA-class probability 0.828575
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16160940 120 + 23771897
GCAGAAACUCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGAAAAGUCGGGUCUUUAUAUUCCAGCACACAUGGCACACAGUAUUUGCGCCUG
(((((.(((.((((.(((...((((........))))..((((((((.....))))))))............))))))).........(((.......))).....))).)))))..... ( -32.20)
>DroSec_CAF1 18462 118 + 1
GCAGAAACUCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGAAAAGUCGGGUCUUUAUAUUCCAGCA--CAUGGCACACAGUAUCUGCGCCUG
(((((.(((.((((.(((...((((........))))..((((((((.....))))))))............))))))).........(((...--..))).....))).)))))..... ( -35.10)
>DroSim_CAF1 20772 118 + 1
GCAGAAACUCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGAAAAGUCGGGUCUUUAUAUUCCAGCA--CAUGGCACACAGUAUCUGCGCCUG
(((((.(((.((((.(((...((((........))))..((((((((.....))))))))............))))))).........(((...--..))).....))).)))))..... ( -35.10)
>DroEre_CAF1 17883 118 + 1
GCAGAAACUCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGAAAAGUCGGGUCUUUAUAUUCCAGCA--CAUGGCAUACAGUAUCUGCGCCUG
(((((.(((.((((.(((...((((........))))..((((((((.....))))))))............))))))).....(((.(((...--..))).))).))).)))))..... ( -36.20)
>consensus
GCAGAAACUCGCCCAGACAGCGAUCCCAAUCCCGAUCAAUGCACCUUUGCCAAAGGUGCAACGCCUCGAAAAGUCGGGUCUUUAUAUUCCAGCA__CAUGGCACACAGUAUCUGCGCCUG
(((((.(((.((((.(((...((((........))))..((((((((.....))))))))............))))))).........(((.......))).....))).)))))..... (-34.34 = -34.15 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:36 2006