| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,158,431 – 16,158,551 |
| Length | 120 |
| Max. P | 0.827170 |
| Location | 16,158,431 – 16,158,551 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -33.27 |
| Consensus MFE | -28.46 |
| Energy contribution | -28.53 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16158431 120 + 23771897 UAAAGCAUACGCAACGUGUUUCCCUACCGACGACGCCGUCGAUGACGUUAAAUUUUCGGUACUCUGGCGGCAUUCAACGAAAGUUAUGCCGCAAAAAUGCGUUCUUGCCUCCUAAACAAA ....(((.(((((((((((......))(((((....)))))...))))).......(((....)))(((((((..(((....))))))))))......))))...)))............ ( -34.90) >DroSec_CAF1 15913 120 + 1 UAAAGCAUACGCAACGUGUUUCCCUACCGAAGACGCCGUUGAUGACGUUAAAUUUUCGGGACUCUGGCGGCAUUCAACGAAAGUUAUGCCGCAAAAAUGCGUUCUUGCCUCCUAAACAAA ....(((.(((((.............(((((((...((((...)))).....))))))).......(((((((..(((....)))))))))).....)))))...)))............ ( -34.60) >DroSim_CAF1 18171 120 + 1 UAAAGCAUACGCAACGUGUUUCCCUCCCAACGACGCCGUUGAUGACGUUAAAUUUUCGGGACUCUGGCGGCAUUCAACGAAAGUUAUGCCGCAAAAAUGCGUUCUUGCCUCCUAAACAAA ....(((.(((((.((.(..((((...(((((....)))))..((.(......).))))))..)))(((((((..(((....)))))))))).....)))))...)))............ ( -35.80) >DroEre_CAF1 15266 119 + 1 UAAAGCAUACGCAACGUGUUUACCU-CCGACGUCGCUGCUGAUUACGUAAAAUUUUCGGGGCUCAGGCGGAAUUCAACGAAAGUUAUGCCGCAAAAAUGCGUUCUUGCCUCCUAAACAAA ....(((.(((((..........((-((((......(((.......)))......)))))).....((((.....(((....)))...)))).....)))))...)))............ ( -27.80) >consensus UAAAGCAUACGCAACGUGUUUCCCUACCGACGACGCCGUUGAUGACGUUAAAUUUUCGGGACUCUGGCGGCAUUCAACGAAAGUUAUGCCGCAAAAAUGCGUUCUUGCCUCCUAAACAAA ....(((.(((((......................(((..(((........)))..))).......(((((((..(((....)))))))))).....)))))...)))............ (-28.46 = -28.53 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:30 2006