| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,767,059 – 1,767,179 |
| Length | 120 |
| Max. P | 0.540178 |
| Location | 1,767,059 – 1,767,179 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.28 |
| Mean single sequence MFE | -43.68 |
| Consensus MFE | -31.07 |
| Energy contribution | -30.60 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1767059 120 - 23771897 UUUCGGGGCUUUCGAGCAGUUCGGAAACGAGCUGCUGCAGGCCAACCACUAUGCGUCGCCUGAAAUCAAGGAGAAAAUCGAGGAUCUGGCCAAGGCCCGCGAGGACUUGGAGAAGGCGUG ((((((((((((..(((((((((....)))))))))...(((((.((.(.((...((.(((.......))).))..)).).))...)))))))))))).)))))................ ( -48.00) >DroVir_CAF1 4214 120 - 1 CUUUGGGGCCUUUGAGCAGUUCGGCAAUGAGCUGCUGCAGGCCAAUCAUUAUGCAUCCCCGGAAAUUAAGGAGAAGAUUGAGGAUUUGGCCAAGGCGCGCGAGGAUUUGGAGAAGGCCUG .....((((((((.(((((((((....)))))))))((.((((((((.(((..(.((.((.........)).)).)..))).)).))))))...)).(....)........)))))))). ( -41.60) >DroGri_CAF1 5036 120 - 1 CUUUGGGGCCUUCGAGCAGUUUGGCAAUGAGUUGCUGCAGGCGAAUCAUUAUGCCUCGCCGGAGAUCAAGGAGCAAAUCGAUGAUUUGGCCAAGGCACGUGAGGAUCUAGAGAAGGCAUG .......((((((..(((((..(((.....)))))))).(((((..(.....)..)))))..(((((..((..((((((...)))))).))......(....))))))...))))))... ( -38.80) >DroWil_CAF1 4994 120 - 1 UUUUGGUGCCUUCGAGCAAUUUGGCAAUGAAUUGCUGCAGGCCAAUCAUUAUGCCUCUCCUGAGAUUAAGGAAAAGAUUGAGGAUUUGGCAAAGGCACGUGAAGAUUUGGAGAAGGCCUG ....((.((((((.((((((((......)))))))).....((((((.(((((((((((((.......)))).......)))).....((....)).))))).)).)))).)))))))). ( -34.91) >DroMoj_CAF1 4555 120 - 1 UUUCGGAGCCUUCGAGCAGUUUGGCAACGAGCUGUUGCAGGCUAAUCAUUAUGCUUCGCCUGAUAUUAAGGAGAAGAUUGAGGAUUUGGCUAAGGCACGCGAAGAUUUGGAGAAGGCCUG ...(((.((((((.(((((((((....)))))))))((.((((((((.(((..((((.(((.......))).))))..))).)).))))))...))...............))))))))) ( -43.60) >DroAna_CAF1 4335 120 - 1 CUUCGGAGCCUUCGAGCAGUUCGGCAACGAGCUGCUCCAGGCCAACCACUACGCCUCUCCCGAGAUCAAGGAGAAGAUCGAGGACCUGGCCAAGGCACGCGAGGACCUGGAGAAGGCCUG ...(((.((((((..((((((((....))))))))((((((((............(((((.........)))))...(((.(..(((.....)))..).))))).))))))))))))))) ( -55.20) >consensus CUUCGGGGCCUUCGAGCAGUUCGGCAACGAGCUGCUGCAGGCCAAUCAUUAUGCCUCGCCUGAGAUCAAGGAGAAGAUCGAGGAUUUGGCCAAGGCACGCGAGGAUUUGGAGAAGGCCUG .......((((((.(((((((((....)))))))))((.((((((...((.....((.((.........)).))......))...))))))...))...............))))))... (-31.07 = -30.60 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:36 2006