| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,158,133 – 16,158,277 |
| Length | 144 |
| Max. P | 0.809263 |
| Location | 16,158,133 – 16,158,248 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Mean single sequence MFE | -31.58 |
| Consensus MFE | -26.42 |
| Energy contribution | -26.93 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16158133 115 + 23771897 --UGGAAAAGCCGGGGGGAAAAACGAGA--A-AACCGGCGGCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAAUGCGGAAAAUGUGGGAAAGGUGCUGCUGGAA --.......(((((..............--.-..)))))(((((........)))))....(((((......((((......((((((.(......).))))))..)))))))))..... ( -30.73) >DroSec_CAF1 15629 116 + 1 --UGGAAAAGCCGGG-GGAAAAACGAGAGGA-AACCGGCGGCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAAUGCGGAAAAUGUGGGAAAGGUGCUGCUGGGA --.......(((((.-.......(....)..-..)))))..((((....))))(((((....)))))......((..(((..(((....((((.....))))....)))..)).)..)). ( -33.40) >DroSim_CAF1 17883 117 + 1 --UGGAAAAGCCGGG-GGAAAAACGGGAGAAAAACCGGAGGCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAAUGCGGAAAAUGUGGGAAAGGUGCUGCUGGGA --........((((.-((.....(((........)))...((((.((((((..(((((....)))))..)))..))))))).((((((.(......).)))))).......)).)))).. ( -29.80) >DroEre_CAF1 14989 114 + 1 GCAGGGAAAGC---GGAGAAAAAAGAGA--A-AACCUGCGGCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAUUGCGGAAAAUGUGGGAAAGGUGCUGCUGGAA (((((......---..............--.-..)))))(((((........)))))....(((((......((((......((((((((......))))))))..)))))))))..... ( -32.40) >consensus __UGGAAAAGCCGGG_GGAAAAACGAGA__A_AACCGGCGGCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAAUGCGGAAAAUGUGGGAAAGGUGCUGCUGGAA ..................................((((((((...........(((((....))))).....((((......((((((.(......).))))))..)))))))))))).. (-26.42 = -26.93 + 0.50)
| Location | 16,158,168 – 16,158,277 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.16 |
| Mean single sequence MFE | -33.55 |
| Consensus MFE | -31.81 |
| Energy contribution | -31.38 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16158168 109 + 23771897 GCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAAUGCGGAAAAUGUGGGAAAGGUGCUGCUGGAAAUGGUUCUCAAGGACACAGUCGAGUUU-----------UG ((((....(((((((((.....((((.(....((((......((((((.(......).))))))..)))).).)))).....))))))))).(((...)))))))..-----------.. ( -29.60) >DroSec_CAF1 15665 120 + 1 GCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAAUGCGGAAAAUGUGGGAAAGGUGCUGCUGGGAACGGUUCUCAAGGACACAGUCGAGCUUAUGUGUGUGUAUG ((((....((((((((((..(.((((.(....((((......((((((.(......).))))))..)))).).)))).)..)))))))))).(((...)))))))............... ( -36.90) >DroSim_CAF1 17920 109 + 1 GCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAAUGCGGAAAAUGUGGGAAAGGUGCUGCUGGGAACGGUUCUCAAGGACACAGUCGAGUUU-----------UG ((((....((((((((((..(.((((.(....((((......((((((.(......).))))))..)))).).)))).)..)))))))))).(((...)))))))..-----------.. ( -34.40) >DroEre_CAF1 15023 109 + 1 GCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAUUGCGGAAAAUGUGGGAAAGGUGCUGCUGGAAAUGGUUCUCAAGGACACAGUCGAGUUU-----------UG ((((....(((((((((.....((((.(....((((......((((((((......))))))))..)))).).)))).....))))))))).(((...)))))))..-----------.. ( -33.30) >consensus GCUCACAAUUGAGAGCUGAACGCAGCUGAUAAACUUGGAGUGCCUACAAUGCGGAAAAUGUGGGAAAGGUGCUGCUGGAAACGGUUCUCAAGGACACAGUCGAGUUU___________UG ((((....((((((((((..(.((((.(....((((......((((((.(......).))))))..)))).).)))))...)))))))))).(((...)))))))............... (-31.81 = -31.38 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:29 2006