Locus 6078

Sequence ID 3L_DroMel_CAF1
Location 16,157,350 – 16,157,470
Length 120
Max. P 0.569966
window9764

overview

Window 4

Location 16,157,350 – 16,157,470
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.47
Mean single sequence MFE -32.38
Consensus MFE -26.90
Energy contribution -26.65
Covariance contribution -0.25
Combinations/Pair 1.19
Mean z-score -1.42
Structure conservation index 0.83
SVM decision value 0.07
SVM RNA-class probability 0.569966
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16157350 120 - 23771897
UGAGUGCUAAAUUGUCACAGAAUGAUGAAUUGGGAAACCAAUAUUAGGGCAUUGAGCAAGUCCACAUUGUUGGCUGUUUGUGCGGCAGAAAUGUUUGCUGGCAUAUUUAGUCUGCGGAUC
(.((((((...(..(((.....)))..)(((((....))))).....)))))).)....((((.((.....(((((..(((((((((((....)))))).)))))..))))))).)))). ( -37.30)
>DroSec_CAF1 14865 120 - 1
UAAGUGAUUAAGUGUUACAUAAUGAUGAUUUGGGAAACCAAUAUGAGGGCAUUGAACAAGUCCACAUUGUCAGUUGUUUGUGCGGCAGAAAUGUUUGCUGGCAUAUUUAGUCUGCGGAUC
...((((((((((((.(((...(((..((((((....)))).....((((.........))))..))..)))..)))..((.(((((((....))))))))))))))))))).))..... ( -32.10)
>DroSim_CAF1 16178 120 - 1
UAAGUGAUUAGGUGUCACAUAAUGAUGAAUUGAAAAACCAAUAUCAGGGCAUUGAGAAAGUCCACAUUGUCAGUUGUUUGUGUGGCAAAAAUGUUUGCUGGCAUAUUUAGUCUGCGGAUC
...(((((.....)))))((((((.(((((((......)))).)))((((.........)))).))))))((((((..(((((((((((....)))))).)))))..))).)))...... ( -26.70)
>DroEre_CAF1 14217 119 - 1
UGAGUGAGAAAUUGUCACA-AACGCUGAAUAGGGAAACCAAUAUUAGGGCAUUGAGCAAGUCCACGUGGUCGGCUGUUUGUGUGGCAAAAAUGUUUGCUGGCAUAUUUAGUCUGCGGAUC
...........((((((((-((((((((...((....)).......((((.........))))......))))).)))..))))))))....((((((.(((.......))).)))))). ( -33.40)
>consensus
UAAGUGAUAAAGUGUCACAUAAUGAUGAAUUGGGAAACCAAUAUUAGGGCAUUGAGCAAGUCCACAUUGUCAGCUGUUUGUGCGGCAAAAAUGUUUGCUGGCAUAUUUAGUCUGCGGAUC
...(((((.....)))))..((((....(((((....)))))....((((.........)))).))))(.((((((..(((((((((((....)))))).)))))..))).))))..... (-26.90 = -26.65 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:27 2006