Locus 6074

Sequence ID 3L_DroMel_CAF1
Location 16,155,254 – 16,155,374
Length 120
Max. P 0.941354
window9750

overview

Window 0

Location 16,155,254 – 16,155,374
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.09
Mean single sequence MFE -37.20
Consensus MFE -33.12
Energy contribution -33.12
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.89
SVM decision value 1.32
SVM RNA-class probability 0.941354
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16155254 120 - 23771897
UCAUCCUGCUCAACCCCAUUCCCGGUGCCAUCCCGACUCCGUCUGGUCGGCUUUUGGUCCCUUUUGUUGCCCCAAAAGCAAAAGCGAUCCAAAGUGCAGCGGCAGACGGACUCAGACUCA
............(((........)))........((.((((((((.(((((((((((((.((((((((........)))))))).)).)))))).))..))))))))))).))....... ( -36.30)
>DroSec_CAF1 12599 117 - 1
UCAUCC---UCAACCCCAUUCCCGGUGCCAUCCCGACUACGUCUGGUCGGCUUUUGGUCCCUUUUGUUGCCCCAAAAGCAAAAGCGAUCCAAAGUGCAGCGGCAGACGGACUCAGACUCA
......---............(((.((((....((((((....))))))((((((((((.((((((((........)))))))).)).)))))).))...))))..)))........... ( -35.30)
>DroSim_CAF1 13965 117 - 1
UCAACC---UCAACCCCAUUCCCGGUGCCAUCCCGACUACGUCUGGUCGGCUUUUGGUCCCUUUUGUUGCCCCAAAAGCAAAAGCGAUCCAAAGUGCAGCGGCAGACGGACUCAGACUCA
......---............(((.((((....((((((....))))))((((((((((.((((((((........)))))))).)).)))))).))...))))..)))........... ( -35.30)
>DroEre_CAF1 12294 111 - 1
---------CCUACCCCAUUCCCGGGGCCAUCCCGACUCCGUCUGGUCGGCUUUUGGUCCCUUUUGUUGCCCCAAAAGCAAAAGCGAUCCAAAGUGCAGCGGCAGACGGACUCAGACUCA
---------....((((......)))).......((.((((((((.(((((((((((((.((((((((........)))))))).)).)))))).))..))))))))))).))....... ( -41.90)
>consensus
UCAUCC___UCAACCCCAUUCCCGGUGCCAUCCCGACUACGUCUGGUCGGCUUUUGGUCCCUUUUGUUGCCCCAAAAGCAAAAGCGAUCCAAAGUGCAGCGGCAGACGGACUCAGACUCA
.....................(((..(((....(((((......)))))((((((((((.((((((((........)))))))).)).)))))).))...)))...)))........... (-33.12 = -33.12 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:14 2006