| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,145,363 – 16,145,473 |
| Length | 110 |
| Max. P | 0.764497 |
| Location | 16,145,363 – 16,145,473 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 93.87 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -25.37 |
| Energy contribution | -25.37 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16145363 110 + 23771897 UCCUUCGUUUUUUGCUCCUUUGGCCUGUUUCCUCUUUGCAUUUUUUGUUUGCCAAAGGGUUCGGGCCACAUUUCAUUCAAGUUAAGACGUAGCAAAGGCAGCCAGCCAUU ..........((((((.(..(((((((...((.(((((((.........)).)))))))..)))))))............((....))).))))))(((.....)))... ( -29.30) >DroSec_CAF1 7403 106 + 1 UCCGUCGUUUUUUGCUCCUUUGGCCUGUAUCCUCUUUGCAUUUUUUGUUUGCCAAAGGGUUCGGGCCACAUUUCAUUCAAGUUAAGUCGUAGCAAAGGCAG----CCAUU .............((((((((((((((.(((((.((.(((.........))).))))))).)))))).............((((.....))))))))).))----).... ( -28.50) >DroSim_CAF1 8173 106 + 1 UCCUGCGUGUUUUGCUUCUUUGGCCUGUUUCCUCUUUGCAUUUUUUGUUUGCCAAAGGGUUCGGGCCACAUUUCAUUCAAGUUAAGACGUAGCAAAGGCAG----CCAUU ..((((...(((((((.(..(((((((...((.(((((((.........)).)))))))..)))))))............((....))).)))))))))))----..... ( -29.50) >consensus UCCUUCGUUUUUUGCUCCUUUGGCCUGUUUCCUCUUUGCAUUUUUUGUUUGCCAAAGGGUUCGGGCCACAUUUCAUUCAAGUUAAGACGUAGCAAAGGCAG____CCAUU ......((.(((((((.(..(((((((...((.(((((((.........)).)))))))..)))))))............(......)).)))))))))........... (-25.37 = -25.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:02 2006