Locus 6067

Sequence ID	3L_DroMel_CAF1
Location	16,145,053 – 16,145,287
Length	234
Max. P	0.835412

overview

Window 5

Location	16,145,053 – 16,145,167
Length	114
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	88.72
Mean single sequence MFE	-35.45
Consensus MFE	-25.76
Energy contribution	-26.95
Covariance contribution	1.19
Combinations/Pair	1.03
Mean z-score	-1.42
Structure conservation index	0.73
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16145053 114 + 23771897
UCUGUUGCCGUUUUGGGGCAGCUUGUUUAUAAUUAGCAUCUUGCAGUUGAUAAGGUCUGGGAUCAGUUGCCG--UGCAUAAGUGU----GUGUGUGCCCAAGAUUUAUGGCAACGACUGG
..(((((((((((((((((((((.((((.....(((.(((((((....).))))))))))))).)))))))(--..((((.....----.))))..))))))))....)))))))..... ( -37.30)
>DroSec_CAF1 7088 120 + 1
UCUGUUGCCGUUUUGGGGCAGCUUGUUUAUAAUUAGCAUCUUGCAGUUGAUAAGGUCUGGGAUCAGUUGCCAGUUGCAUGUGUGUGUGAGUGUGCGUCCAAGAUUUAUGGCAACGACUGG
..(((((((((((((((((((((..(.((((....(((.((.(((..((((..........))))..))).)).)))...)))).)..))).))).))))))))....)))))))..... ( -38.60)
>DroSim_CAF1 7858 120 + 1
UCUGUUGCCGUUUUGGGGCAGCUUGUUUAUAAUUAGCAUCUUGCAGUUGAUAAGGUCUGGGAUCAGUUGCCAGUUGCAUGUGUGUUUGUGUGUGUGUCCAAGAUUUAUGGCAACGACUGG
..(((((((((((((((((((((.((((.....(((.(((((((....).))))))))))))).)))))))....(((((..(....)..)))))..)))))))....)))))))..... ( -35.00)
>DroEre_CAF1 6623 107 + 1
UCUGUUGCCGUUUUGGGGCAGCUUGUUUAUAAUUAGCAUCUUGCAGUUGAUAAGGUCUGGGAUCCGUUUCCG--UG--------CGUGUGUGUGUGCCCAAGAUUUAUGGC---GACUGG
...((((((((....(((((.((((((...((((.((.....))))))))))))((.(((((.....)))))--.)--------).........))))).......)))))---)))... ( -30.90)
>consensus
UCUGUUGCCGUUUUGGGGCAGCUUGUUUAUAAUUAGCAUCUUGCAGUUGAUAAGGUCUGGGAUCAGUUGCCA__UGCAUGUGUGUGUGUGUGUGUGCCCAAGAUUUAUGGCAACGACUGG
..(((((((((((((((((((((.((((.....(((.(((((((....).))))))))))))).)))))))....(((....)))............)))))))....)))))))..... (-25.76 = -26.95 +   1.19)

alignment

secondary structure

dotplot

Window 6

Location	16,145,167 – 16,145,287
Length	120
Sequences	4
Columns	120
Reading direction	reverse
Mean pairwise identity	96.20
Mean single sequence MFE	-37.52
Consensus MFE	-32.83
Energy contribution	-33.08
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-2.13
Structure conservation index	0.87
SVM decision value	0.73
SVM RNA-class probability	0.835412
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16145167 120 - 23771897
UAUGUGCAUUUGUUACAUGGCAAUGUGCAACAUGUGGCCUCUUUUUGCGCCACAUCUCGAUUGCAGGAUGUUUGUCUGCGAUUCUUUUUGGGGGAGCGCCCUGCCAAUAUCCUGUUGUUG
..((..((((.(((....)))))))..))..((((((((.......).)))))))..((((.((((((((((.((..(((.(((((.....))))))))...)).)))))))))).)))) ( -40.40)
>DroSec_CAF1 7208 117 - 1
UAUGUGCAUUUGUUACAUGGCAAUGUGCAACAUGUGGCCUCUUUUUGCGCCACAUCUCGAUUGCAGGAUGUUUGUCUGCGAUUCUUUUUGGGGGAGCGCCCUGCCAAUAUCCUG---UUG
..((..((((.(((....)))))))..))..((((((((.......).))))))).......((((((((((.((..(((.(((((.....))))))))...)).)))))))))---).. ( -37.70)
>DroSim_CAF1 7978 117 - 1
UAUGUGCAUUUGUUACAUGGCAAUGUGCAACAUGUGGCCUCUUUUUGCGCCACAUCUCGAUUGCAGGAUGUUUGUCUGCGAUUCUUUUUGGGGGAGAGCCCUGCCAAUAUCCUG---UUG
..((..((((.(((....)))))))..))..((((((((.......).))))))).......((((((((((.((..((..(((((....)))))..))...)).)))))))))---).. ( -36.60)
>DroEre_CAF1 6730 117 - 1
UAUGUGCAUUUGUUACAUGGCAAUGUGCAACAUGUGGCCUCUUUUUUCGCCACUUUUAGAUUGCAGGAUGUUUGUCUGCGAUUCUUUUUGGGGGAGCGCCUUGCCAAUAUCCUG---UUG
.(((((((((((((....))))).)))).))))(((((..........))))).........((((((((((.((..(((.(((((.....))))))))...)).)))))))))---).. ( -35.40)
>consensus
UAUGUGCAUUUGUUACAUGGCAAUGUGCAACAUGUGGCCUCUUUUUGCGCCACAUCUCGAUUGCAGGAUGUUUGUCUGCGAUUCUUUUUGGGGGAGCGCCCUGCCAAUAUCCUG___UUG
.(((((((((((((....))))).)))).))))(((((..........)))))..........(((((((((.((..(((.(((((....))))).)))...)).)))))))))...... (-32.83 = -33.08 +   0.25)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:01 2006