Locus 6066

Sequence ID 3L_DroMel_CAF1
Location 16,144,814 – 16,144,934
Length 120
Max. P 0.728928
window9734

overview

Window 4

Location 16,144,814 – 16,144,934
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.08
Mean single sequence MFE -23.40
Consensus MFE -21.83
Energy contribution -21.82
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.93
SVM decision value 0.42
SVM RNA-class probability 0.728928
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16144814 120 - 23771897
CUUAAUCGCCGGCCAAUUAGAAUAACAACUACCUUCUCUGGGAAAUUUAUUAACGUUUAUCAAUUGAUUGCCGGCGAAUGCAAUUACACGAUACAAACUGGAAAUUCACCCCAUCCCUUC
.....((((((((.((((((...........(((.....)))((((........)))).....)))))))))))))).....................(((.........)))....... ( -21.60)
>DroSec_CAF1 6852 120 - 1
CUUAAUCGCCGGCCAAUUAGAAUAACAACUACCUUCUCUGGGAAAUUUAUUAACGUUUAUCAAUUGAUUGCCGGCGAAUGCAAUUACACGUUACAAACUGGAAAUUCACCCCAACCCUUC
.....((((((((.((((((...........(((.....)))((((........)))).....)))))))))))))).....................(((.........)))....... ( -21.80)
>DroSim_CAF1 7620 118 - 1
CUUAAUCGCCGGCCAAUUAGAAUAACAACUACCUUCUCUGGGAAAUUUAUUAACGUUUAUCAAUUGAUUGCCGGCGAAUGCAAUUACACGAUACAAACUGGAAAUUCACCCCAACCCU--
.....((((((((.((((((...........(((.....)))((((........)))).....)))))))))))))).....................(((.........))).....-- ( -21.80)
>DroEre_CAF1 6399 120 - 1
CUUAAUCGCCGGCCAAUUAGAAUAACAACUACCUUCUCUGGGAAAUUUAUUAACGUUUAUCAAUUGAUUGCCGGCGAAUGCAAUUACACGUUGCAAACUGGAAAUUCACUCCACCCCUUC
.....((((((((.((((((...........(((.....)))((((........)))).....)))))))))))))).((((((.....))))))...((((.......))))....... ( -28.40)
>consensus
CUUAAUCGCCGGCCAAUUAGAAUAACAACUACCUUCUCUGGGAAAUUUAUUAACGUUUAUCAAUUGAUUGCCGGCGAAUGCAAUUACACGAUACAAACUGGAAAUUCACCCCAACCCUUC
.....((((((((.((((((...........(((.....)))((((........)))).....)))))))))))))).....................(((.........)))....... (-21.83 = -21.82 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:58 2006