Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,763,207 – 1,763,327 |
Length | 120 |
Max. P | 0.755089 |
Location | 1,763,207 – 1,763,327 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.44 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -32.83 |
Energy contribution | -32.53 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.24 |
Mean z-score | -1.60 |
Structure conservation index | 0.89 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1763207 120 - 23771897 GAUCAGCUUGACCAGCUGUCUAUGCGCAUGCAGCACAACUUAGAGCAACAGAUCCAGGCACGCAACCACUCGGGCGUCUCCGAGGACUCACUCAAGGAGUUCUCGAUGAUGUUCAAGCAC .....((((((...(((((((.(((....)))((.(......).)).........))))).))..((....))(((((..(((((((((.(....))))))))))..))))))))))).. ( -38.70) >DroVir_CAF1 482 120 - 1 GAUCAGCUGGACCAGCUGUCGAUGCGCAUGCAACACAAUCUGGAGCAACAGAUACAGGCGCGCAACCAUUCGGGCGUCUCGGAGGAUUCGCUCAAGGAAUUCUCGAUGAUGUUCAAGCAC ((.((((((...))))))))..(((((..((......(((((......)))))....))))))).......((((((((((.(((((((.......)))))))))).)))))))...... ( -41.10) >DroGri_CAF1 485 120 - 1 GAUCAGCUGGAUCAGCUAUCAAUGCGUAUGCAACACAAUCUGGAGCAACAGAUACAGGCACGCAAUCAUUCGGGCGUUUCCGAGGAUUCGCUCAAGGAAUUCUCGAUGAUGUUCAAGCAU (((.(((((...)))))))).(((((..(((......(((((......)))))....)))..)........(((((((..(((((((((.......)))))))))..)))))))..)))) ( -40.20) >DroWil_CAF1 491 120 - 1 GAUCAACUGGAUCAAUUGUCGAUGCGUAUGCAGCAUAAUUUGGAACAACAGAUACAGGCACGCAAUCAUUCGGGCGUCUCUGAGGAUUCGCUUAAGGAAUUCUCAAUGAUGUUCAAGCAC ((((.....))))...(((.(((((((..((......(((((......)))))....)))))).)))....(((((((..(((((((((.......)))))))))..)))))))..))). ( -34.60) >DroMoj_CAF1 489 120 - 1 GAUCAAUUGGAUCAACUAUCGAUGCGUAUGCAACAUAAUUUGGAGCAACAGAUACAGGCACGCAAUCAUUCGGGCGUCUCAGAGGAUUCGCUCAAGGAAUUCUCCAUGAUGUUCAAGCAC ((((.....)))).......(((((((..((......(((((......)))))....)))))).)))....(((((((...((((((((.......))))))))...)))))))...... ( -32.10) >DroAna_CAF1 482 120 - 1 GACCAGCUGGACCAGCUCUCCAUGCGCAUGCAACACAACUUGGAACAGCAGAUCCAGGCACGCAACCACUCCGGCGUCUCCGAGGACUCACUGAAGGAGUUCUCGAUGAUGUUCAAGCAC ((.(.((((((...((.......))((.(((........(((((.(....).)))))))).))......))))))(((..(((((((((.(....))))))))))..)))).))...... ( -35.30) >consensus GAUCAGCUGGACCAGCUGUCGAUGCGCAUGCAACACAAUUUGGAGCAACAGAUACAGGCACGCAACCAUUCGGGCGUCUCCGAGGAUUCGCUCAAGGAAUUCUCGAUGAUGUUCAAGCAC (((.(((((...))))))))..(((((.(((......(((((......)))))....))).))........(((((((..(((((((((.......)))))))))..)))))))..))). (-32.83 = -32.53 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:28 2006