Locus 6059

Sequence ID 3L_DroMel_CAF1
Location 16,132,785 – 16,132,905
Length 120
Max. P 0.510574
window9716

overview

Window 6

Location 16,132,785 – 16,132,905
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.97
Mean single sequence MFE -35.43
Consensus MFE -29.96
Energy contribution -29.63
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.85
SVM decision value -0.05
SVM RNA-class probability 0.510574
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16132785 120 + 23771897
AGGGUAUCGCCCACAUAUGUGCAUUAAUCUGCAUUCACGAGUGUUAGUCAUUAACUUGCUAUUGUUGUGGCUAAUGCAAAAAAGACCACUUUUGACUCAUUGCGUCCGUUGGCAGGGCGA
......((((((......(((((......)))))....(((((((((((((.(((........)))))))))))).(((((........)))))))))..(((........))))))))) ( -33.20)
>DroSim_CAF1 8012 119 + 1
AGUGUAUCGCCCACAUAUGUGCAAUAAUCUGCAUGGCAGAGUGUUAGUCAUUAACUUGCUAUUGUUGUGGCUAAUGCAAA-AAGACCACUUUUGACUCAUUGCGUCCGUUGGCAGGGCGA
......((((((........(((((..(((((...)))))(((((((((((.(((........)))))))))))))).((-(((....))))).....)))))(((....))).)))))) ( -37.50)
>DroYak_CAF1 849 119 + 1
AGGGUAUCGCCCACAAAUGUGCAUUAAUCUGCAUGCCAAAGUGUUAGUCAUUAACUUGCUAUUGUUGUGACUGGUGCAAA-AAGUCUACUUUUUACUCAUUGCGGCUGUUGGCAAGGCGA
......(((((.......(((((......)))))(((((.(..((((((((.(((........)))))))))))..)(((-(((....))))))..............)))))..))))) ( -35.60)
>consensus
AGGGUAUCGCCCACAUAUGUGCAUUAAUCUGCAUGCCAGAGUGUUAGUCAUUAACUUGCUAUUGUUGUGGCUAAUGCAAA_AAGACCACUUUUGACUCAUUGCGUCCGUUGGCAGGGCGA
......((((((......(((((......)))))......(..((((((((.(((........)))))))))))..).......................(((........))))))))) (-29.96 = -29.63 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:39 2006