Locus 6053

Sequence ID 3L_DroMel_CAF1
Location 16,121,052 – 16,121,172
Length 120
Max. P 0.579003
window9696

overview

Window 6

Location 16,121,052 – 16,121,172
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -41.64
Consensus MFE -40.58
Energy contribution -40.81
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -1.48
Structure conservation index 0.97
SVM decision value 0.09
SVM RNA-class probability 0.579003
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16121052 120 - 23771897
GCUUUCAUCUUUCAAGUGCUGCCGAGUUUGGGCAAAACGACUUGGAUUACAAUGGCGAGAGAGUGACUUCAAAGCGGAAACGCCGACGCUUGUCGCGCCAAUCGUCCUGUCUCUUUCAUU
(((.......((((((((.((((.......))))...).))))))).......)))..(((((.(((......(((....))).((((.(((......))).))))..))).)))))... ( -35.84)
>DroSec_CAF1 6789 120 - 1
GCUUCCAUCUUUCAAGUGCUGCCGAGUUUGGGCAAAACGACUUGGAUUACAAUGGCGAGAGAGUGACUUCAAAGCGGAAGCGCCGACGCUUGUCGCGCCGAGCGUCCUGUCUCUUUCUCU
(((.......((((((((.((((.......))))...).))))))).......)))(((((((.(((......((....))...((((((((......))))))))..))).))))))). ( -44.54)
>DroSim_CAF1 6119 120 - 1
GCUUUCAUCUUUCAAGUGCUGCCGAGUUUGGGCAAAACGACUUGGAUUACAAUGGCGAGAGAGUGACUUCAAAGCGGAAGCGCCGACGCUUGUCGCGCCGAGCGUCCUGUCUCUUUCUCU
(((.......((((((((.((((.......))))...).))))))).......)))(((((((.(((......((....))...((((((((......))))))))..))).))))))). ( -44.54)
>consensus
GCUUUCAUCUUUCAAGUGCUGCCGAGUUUGGGCAAAACGACUUGGAUUACAAUGGCGAGAGAGUGACUUCAAAGCGGAAGCGCCGACGCUUGUCGCGCCGAGCGUCCUGUCUCUUUCUCU
(((.......((((((((.((((.......))))...).))))))).......)))(((((((.(((......(((....))).((((((((......))))))))..))).))))))). (-40.58 = -40.81 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:21 2006