| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,119,248 – 16,119,366 |
| Length | 118 |
| Max. P | 0.871192 |
| Location | 16,119,248 – 16,119,366 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.67 |
| Mean single sequence MFE | -27.13 |
| Consensus MFE | -21.72 |
| Energy contribution | -21.83 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16119248 118 - 23771897 --GGGGGAAACCAGCAUAAAGGAGCCGCAAGGUGCAGGAGGUUGAGUGUGGUUGCAUACUUAGGCAAAGUAUAGAAAAACACGGAAUAAUGCGUAAAUUGUUUAAGUAGGAUCAAAAGAA --..((....)).((.((((.(((((....)))(((....(((..((((..((..((((((.....))))))..))..))))..)))..))).....)).)))).))............. ( -27.60) >DroSec_CAF1 4974 120 - 1 AGGGGGGAAACCAGCAUAAAGGAGCCGCAAGGUGCGGGUGUUUGAGCUCGGUUGGAUACUUAGGCAAAGUAUAGAAAAACACGGAAUAAUGCGUAAAUUUUCUAAGUAGGAUCAAAAGAG ....((....))(((((...(..(((....))).)..)))))....(((..((((.((((((((....((........))(((........)))......))))))))...))))..))) ( -27.60) >DroSim_CAF1 4338 106 - 1 AGGGGGGAAACCAGCAUAAAGGAGCCGCAAGGUGCGGGU--------------GGAUACUUAGGCAAAGUAUAGAAAAACACGGAAUAAUGCGUAAAUUGUCUAAGUAGGAUCAAAAGAG ....((....))..(((...(..(((....))).)..))--------------)..(((((((((((.((........))(((........)))...)))))))))))............ ( -26.20) >consensus AGGGGGGAAACCAGCAUAAAGGAGCCGCAAGGUGCGGGUG_UUGAG___GGUUGGAUACUUAGGCAAAGUAUAGAAAAACACGGAAUAAUGCGUAAAUUGUCUAAGUAGGAUCAAAAGAG ....((....)).........(.(((....))).).....................(((((((((((.((........))(((........)))...)))))))))))............ (-21.72 = -21.83 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:02 2006