Locus 6045

Sequence ID 3L_DroMel_CAF1
Location 16,115,958 – 16,116,078
Length 120
Max. P 0.901734
window9676

overview

Window 6

Location 16,115,958 – 16,116,078
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.30
Mean single sequence MFE -18.37
Consensus MFE -17.80
Energy contribution -17.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.97
SVM decision value 1.02
SVM RNA-class probability 0.901734
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16115958 120 + 23771897
AGCCAACCAAUUAAAAUAUGUCAACAAUUUCUAUGACUCUUUCUCCGUCCGUCUGGCUGUCUGACUUCAACCCAAGCGAGACAGACAACAAAAAGCAAUCCAAAAAAAAAAAAAAAAGAA
.((................((((..........)))).........(((.((((.(((...((....)).....))).)))).)))........))........................ ( -17.80)
>DroSec_CAF1 1775 114 + 1
AGCC----AAUUAAACUAUGUCAACAAUUUCUAUGACUCUUUCUCCGUCCGUCUGGCUGUCUGACUUCAACCCAAGCGAGACAGACAACAACGAGCAAUCAAAAA--AAAAAAAGAAAAA
....----...........((((..........))))(((((....(((.((((.(((...((....)).....))).)))).)))......((....)).....--....))))).... ( -19.50)
>DroSim_CAF1 1103 118 + 1
AGCCAACCAAUUAAAAUAUGUCAACAAUUUCUAUGACUCUUUCUCCGUCCGUCUGGCUGUCUGACUUCAACCCAAGCGAGACAGACAACAAAAAGCAAUCAAAAA--AAAAAAAAAAGAA
.((................((((..........)))).........(((.((((.(((...((....)).....))).)))).)))........)).........--............. ( -17.80)
>consensus
AGCCAACCAAUUAAAAUAUGUCAACAAUUUCUAUGACUCUUUCUCCGUCCGUCUGGCUGUCUGACUUCAACCCAAGCGAGACAGACAACAAAAAGCAAUCAAAAA__AAAAAAAAAAGAA
.((................((((..........)))).........(((.((((.(((...((....)).....))).)))).)))........))........................ (-17.80 = -17.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:47 2006