Locus 6044

Sequence ID 3L_DroMel_CAF1
Location 16,115,561 – 16,115,678
Length 117
Max. P 0.888767
window9675

overview

Window 5

Location 16,115,561 – 16,115,678
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.78
Mean single sequence MFE -29.27
Consensus MFE -24.11
Energy contribution -25.33
Covariance contribution 1.22
Combinations/Pair 1.03
Mean z-score -3.01
Structure conservation index 0.82
SVM decision value 0.95
SVM RNA-class probability 0.888767
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16115561 117 + 23771897
CGAAAAGCUUGCGCAACGAGAUUUUACAACUACAUAUAGUGGAAUAUAUCAUGACGAUCCG---UCUGAUAUAUGUACGUUUACAAAAUUCAACAGCGAUCCGCAGCGCAAUUUCAUCAA
.((((...((((((((((...........((((.....)))).((((((((.((((...))---))))))))))...))))..............(((...))).))))))))))..... ( -29.20)
>DroSec_CAF1 1400 120 + 1
CGAAAAGCUUGCGCAACAAGAUUUUACAACAACAUAUAGUGGAAUAUAUCAUGACGGUCCGUCGUCUGAUAUACAUACGUUUACAAAAUUCAACAGCGAUCCGCAGCGCAAUUUCAUCAA
.((((...((((((.....(......)...........(((((.(((((((.(((((....))))))))))))....((((.............)))).))))).))))))))))..... ( -28.22)
>DroSim_CAF1 732 118 + 1
CGAAAAGCUUGCGCAACAAGACUUUACAACUACAUAUAGUGGAAUAUAUCAUGACGAUCCGUCGUCUGAUAUACGUU--UUUUCAAAAUUCAACAGCGAUCCGCAGCGCAAUUUCAUCAA
.((((...((((((...(((((.......((((.....))))..(((((((.(((((....)))))))))))).)))--))..............(((...))).))))))))))..... ( -30.40)
>consensus
CGAAAAGCUUGCGCAACAAGAUUUUACAACUACAUAUAGUGGAAUAUAUCAUGACGAUCCGUCGUCUGAUAUACGUACGUUUACAAAAUUCAACAGCGAUCCGCAGCGCAAUUUCAUCAA
.((((...((((((.....((.(((....((((.....))))..(((((((.(((((....))))))))))))............))).))....(((...))).))))))))))..... (-24.11 = -25.33 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:46 2006