Locus 6042

Sequence ID 3L_DroMel_CAF1
Location 16,112,097 – 16,112,194
Length 97
Max. P 0.835319
window9673

overview

Window 3

Location 16,112,097 – 16,112,194
Length 97
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 91.65
Mean single sequence MFE -15.90
Consensus MFE -12.57
Energy contribution -13.08
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.79
SVM decision value 0.73
SVM RNA-class probability 0.835319
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16112097 97 - 23771897
CAUUUUCAUUCUUCACAUCGAGAUUCUUGUUUCAUAUUU-UUUCCCCUGCUUAAUUUGCCCACGCAAAAUUCAGCAUUAUGAAUGAAACACAUCGGAU
...((((((((........(((((....)))))......-.......((((.(((((((....)).))))).))))....)))))))).......... ( -17.30)
>DroSec_CAF1 14383 98 - 1
CAUUUUCAUUCUUCACAUCGAGAAUCUUGUUUCAUAUUUUUUUCCCCUGCUUAAUUUGCCCACGCAAAAUUCAGCAUUAUGAAUGAAACACAUCGGAU
...((((((((........((((......))))..............((((.(((((((....)).))))).))))....)))))))).......... ( -15.60)
>DroSim_CAF1 14348 97 - 1
CAUUUUCAUUCUUCACAUCGAGAAUCUUGUUUCAUAUUU-UUUCCCCUGCUUAAUUUGCCCACGCAAAAUUCAGCAUUAUGAAUGAAACACAACGGAU
...((((((((........((((......))))......-.......((((.(((((((....)).))))).))))....)))))))).......... ( -15.60)
>DroEre_CAF1 14297 94 - 1
---UUUCAUUCUCCGCGUCUAGAAUCUUGUUUCAUAUUUUUUUGCCGUGCUUAGUUUGCCCACGCAAAA-UCAACAUUAUGAAUGAAACACAUCAGAU
---.............((((.((....((((((((....((((((.(((...........)))))))))-(((......)))))))))))..)))))) ( -15.10)
>consensus
CAUUUUCAUUCUUCACAUCGAGAAUCUUGUUUCAUAUUU_UUUCCCCUGCUUAAUUUGCCCACGCAAAAUUCAGCAUUAUGAAUGAAACACAUCGGAU
...((((((((..........(((......)))..............((((...(((((....)))))....))))....)))))))).......... (-12.57 = -13.08 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:44 2006