Locus 6041

Sequence ID 3L_DroMel_CAF1
Location 16,110,597 – 16,110,717
Length 120
Max. P 0.562457
window9672

overview

Window 2

Location 16,110,597 – 16,110,717
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.58
Mean single sequence MFE -29.62
Consensus MFE -27.96
Energy contribution -28.12
Covariance contribution 0.16
Combinations/Pair 1.07
Mean z-score -1.11
Structure conservation index 0.94
SVM decision value 0.06
SVM RNA-class probability 0.562457
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16110597 120 - 23771897
UUACGUCAGAGAGUCUGGCCCACACGCACACAUGCACACAUGCAGACAGGCACACGCACACUAGUGCACAAACGGAAAAUGAGGUUAUUGCCAAUCCCGUCUGCAAUGCUCGAGUAAACA
(((((((((.....)))))......(((....))).....(((((((.((.....((((....))))...............(((....)))...)).)))))))........))))... ( -31.60)
>DroSec_CAF1 12882 120 - 1
UUACGUCAGAGAGUCUGGCCCACACGCACACAUGCUCACAUGCAGACAGGCACACGCACACUAGGGCACAAACGGAAAAUGAGGUUAUUGCCAAUCCCGUCUGCAAUGCUCGAGUAAACA
....(((((.....))))).............(((((.(((((((((..((....)).......((((..(((..........)))..))))......)))))).)))...))))).... ( -29.40)
>DroSim_CAF1 12825 120 - 1
UUACGUCAGAGAGUCUGGCCCACACGCACACAUGCACACAUGCAGACAGGCACACGCACACUAGUGCACAAACGGAAAAUGAGGUUAUUGCCAAUCCCGUCUGCAAUGCUCGAGUAAACA
(((((((((.....)))))......(((....))).....(((((((.((.....((((....))))...............(((....)))...)).)))))))........))))... ( -31.60)
>DroEre_CAF1 12828 120 - 1
UUACGUCAGAAAGUCUGGCCCAUACGCACACAUGCACACAUGCAGACAGGCACACGCAUACUAGUGCACAAACAGAAAAUGAGGUUAUUGCCAAUCCCGUCUGCAAUGCUCGAGUAAACA
(((((((((.....))))).(((..(((....))).....(((((((.((.....((((....))))...............(((....)))...)).)))))))))).....))))... ( -30.00)
>DroYak_CAF1 17550 120 - 1
UUACGUCAGAAAGUCUGGCCCACACACACACAUGCACACAUGGAGACAGGCACACGCAAACUAUUGCACAAACGGAAAAUGAGGUUAUUGCCAAUCCCGUCUGCAAUGCUCGAGUAAACA
(((((((((.....)))))...........((((....))))(((....(((.((((((....))))...............(((....)))......)).)))....)))..))))... ( -25.50)
>consensus
UUACGUCAGAGAGUCUGGCCCACACGCACACAUGCACACAUGCAGACAGGCACACGCACACUAGUGCACAAACGGAAAAUGAGGUUAUUGCCAAUCCCGUCUGCAAUGCUCGAGUAAACA
(((((((((.....)))))..............(((....(((((((.((.....((((....))))...............(((....)))...)).))))))).)))....))))... (-27.96 = -28.12 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:43 2006