Locus 604

Sequence ID 3L_DroMel_CAF1
Location 1,758,669 – 1,758,765
Length 96
Max. P 0.964462
window923

overview

Window 3

Location 1,758,669 – 1,758,765
Length 96
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 72.58
Mean single sequence MFE -21.97
Consensus MFE -14.93
Energy contribution -13.80
Covariance contribution -1.13
Combinations/Pair 1.24
Mean z-score -1.81
Structure conservation index 0.68
SVM decision value 1.57
SVM RNA-class probability 0.964462
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1758669 96 + 23771897
GAUAUCAGUUGGUUGAACUUGGUAUCGUUAGUCGAUAGGAGGAUAUCAAUUUUGUAUAAAAGCGCG-------------UUUAUUUAAACUUA-----------AAGUAAAAUGCGUAAA
((((((((((.....))))...(((((.....)))))....))))))..............(((((-------------(((((((.......-----------)))).))))))))... ( -19.30)
>DroSec_CAF1 2540 108 + 1
GAUAUCAGUUGGUUGAACGUGGUAUCGUUAAUCGAAAGAAGGAUAUCAAAUU-CUAAAAAAGCGCGAAAGUUGGAAGCAUUUACUUAAAUUAA-----------AAAUAAAGUGCGCAAA
((((((..((((((((.((......))))))))))......)))))).....-........((((....)).....((((((...........-----------.....))))))))... ( -21.39)
>DroSim_CAF1 2543 108 + 1
GAUAUCAGUUGGUUGAACGUGGUAUCGUUAAUCGAAAAAAGGAUAUCAAAUU-CUAAAAAAGCGCGAAAGUUGAAAGCACUUACUUAAAUUUA-----------AAAUAAAGUGCGCAAA
((((((..((((((((.((......))))))))))......)))))).....-........((((....)).....((((((...........-----------.....))))))))... ( -23.69)
>DroYak_CAF1 2546 117 + 1
GAUAUCAGUUGGUAUAGUGUGGUAUCGCUUAUCGAUAUCUUGAUAUCAAAUU-UUUACAAAGCGCGAAAAAAUG--UUCUUAAACUAAAUUUUAUUUACUGGGCAAAUAAAGUGCGUAAA
((((((((((((((.((((......)))))))))))....))))))).....-........(((((((......--))).........(((((((((.......)))))))))))))... ( -23.50)
>consensus
GAUAUCAGUUGGUUGAACGUGGUAUCGUUAAUCGAAAGAAGGAUAUCAAAUU_CUAAAAAAGCGCGAAAGUUGG__GCAUUUACUUAAAUUUA___________AAAUAAAGUGCGCAAA
((((((..((((((.((((......))))))))))......))))))..............(((((..............................................)))))... (-14.93 = -13.80 +  -1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:25 2006