Locus 6037

Sequence ID 3L_DroMel_CAF1
Location 16,103,905 – 16,103,995
Length 90
Max. P 0.587620
window9665

overview

Window 5

Location 16,103,905 – 16,103,995
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 98.44
Mean single sequence MFE -15.32
Consensus MFE -15.48
Energy contribution -15.08
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.13
Structure conservation index 1.01
SVM decision value 0.11
SVM RNA-class probability 0.587620
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16103905 90 + 23771897
CUUCGAUAUUUAGCUGGACUUAAUUUGUUUAGAACUAAUUAAGUGAUUAAAUUCUACGCGUUUAAUUUAGUUAUUCAUUGUCUCCGGUUU
...........((((((((((((((.((.....)).)))))))((((((((((..(....)..)))))))))).........))))))). ( -15.70)
>DroSec_CAF1 6117 90 + 1
CUUCCAUAUUUAGCUGGACUUAAUUUGUUUAGAACUAAUUAAGUGAUUAAAUUCUACGCGUUUAAUUUAGUUAUUCAUUGUCUCCGGUUU
...........((((((((((((((.((.....)).)))))))((((((((((..(....)..)))))))))).........))))))). ( -15.70)
>DroSim_CAF1 6128 90 + 1
CUUCGAUAUUUAGCUGGACUUAAUUUGUUUAGAACUAAUUAAGUGAUUAAAUUCUACGCGUUUAAUUUAGUUAUUCAUUGUCUCCGGUUU
...........((((((((((((((.((.....)).)))))))((((((((((..(....)..)))))))))).........))))))). ( -15.70)
>DroEre_CAF1 6184 90 + 1
CUUCGAUAUUUAGCUGGACUUAAUUUGUUUAGAACUAAUUAAGUAAUUAAAUUCUACGCGUUUAAUUUAGUUAUUCAUUGUCUCCGGUUU
...........((((((((((((((.((.....)).)))))))((((((((((..(....)..)))))))))).........))))))). ( -15.60)
>DroYak_CAF1 10834 90 + 1
CUUCGAUAUUUAGCUGGACUUAAUUUGUUUAGAACUAAUUAAGUAAUUAAAUUCUACGCGUUUAAUUUAGUUAUUCAUUGUCUUCGGUUU
....((((..((((((((.((((..(((.(((((....((((....)))).))))).))).)))))))))))).....))))........ ( -13.90)
>consensus
CUUCGAUAUUUAGCUGGACUUAAUUUGUUUAGAACUAAUUAAGUGAUUAAAUUCUACGCGUUUAAUUUAGUUAUUCAUUGUCUCCGGUUU
...........((((((((((((((.((.....)).)))))))((((((((((..(....)..)))))))))).........))))))). (-15.48 = -15.08 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:35 2006