Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,093,143 – 16,093,263 |
Length | 120 |
Max. P | 0.514777 |
Location | 16,093,143 – 16,093,263 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -35.47 |
Consensus MFE | -29.74 |
Energy contribution | -30.97 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.05 |
Mean z-score | -1.90 |
Structure conservation index | 0.84 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16093143 120 - 23771897 GUUGACAGAGGUCCCUGGGGUCGAAUAAUAACUAUGGAUUCAAUCGGUUAACAGAGAGUUCGUUACUCGGGCAACCAAAUUUGAAUCGGGUAAAAUUGAUUUAGGGACUCGUGCAAUCGC ((((.((..((((((((((.((((......(((...(((((((..((((..(...((((.....)))).)..))))....))))))).)))....))))))))))))))..))))))... ( -35.80) >DroSim_CAF1 1 120 - 1 GUUGACAGAGGUCCCUGGGGUCGAAUAAUAACUAUGGAUUCAAUCGGUUAACAGAGAGUUCGUUACUCGGGCAACGAAAUUUGAAUCGGUUAAAAUUGGCUUAGGGACUCGGGCAAUAGC ((((...(((.((((((((.((((....(((((...((((((((((.....(...((((.....)))).)....)))...))))))))))))...)))))))))))))))...))))... ( -35.10) >DroYak_CAF1 1 119 - 1 GUUGACAGAGGUCCCUGGGGUCGAAAAAUAACUAUGGAUUCAAUCGGUUAACAGAGAGUUCGUUAAUCGGGCAACCAAAUAUGAAUCGGUUACAAUUGAUUUAGGGUCUCAGGCAAUGG- ((((...((((.(((((((.((((....(((((...((((((...(((((((.(......))))))))((....)).....)))))))))))...)))))))))))))))...))))..- ( -35.50) >consensus GUUGACAGAGGUCCCUGGGGUCGAAUAAUAACUAUGGAUUCAAUCGGUUAACAGAGAGUUCGUUACUCGGGCAACCAAAUUUGAAUCGGUUAAAAUUGAUUUAGGGACUCGGGCAAUAGC ((((...(((.((((((((.((((....(((((...(((((((..((((..(...((((.....)))).)..))))....))))))))))))...)))))))))))))))...))))... (-29.74 = -30.97 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:34 2006