| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,076,940 – 16,077,033 |
| Length | 93 |
| Max. P | 0.842565 |
| Location | 16,076,940 – 16,077,033 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 67.09 |
| Mean single sequence MFE | -44.93 |
| Consensus MFE | -20.67 |
| Energy contribution | -20.57 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16076940 93 - 23771897 GAAUGCGGCCGCCUAUCAGAAUGCCGCUGUGGCCGCCGGACAGGGUGGUU---AUGGCGGAGCAGCAGGAGC---GGGCGCUGGC------GCCACCUCUGGCCC ......((((.............((((((((((((((......)))))))---))))))).......((((.---.((((....)------)))..)))))))). ( -46.10) >DroVir_CAF1 5573 82 - 1 AAAUGCGGCCGCAUAUCAAAAUGCUGCUGUGGCUGCUGGCCAGGGCGGGGGCGGGUAUGCAGCGGCCGGC---------GCCGGC------------GCUGGU-- ....(((((((((...((......)).)))))))))..(((((.((.((.((.(((........))).))---------.)).))------------.)))))-- ( -41.60) >DroWil_CAF1 6431 96 - 1 CAAUGCGGCGGCCUAUCAGAACGCUGCUGUGGCUGCCGGCCAGGGUGGCU---AUG---CAGCAGCCGGCGC---UGGCGCUGGCUCAGGAGCUGCCGCUGGCGG .....((((((((...(((.......))).))))))))(((((((..(((---.((---....((((((((.---...))))))))))..)))..)).))))).. ( -55.40) >DroYak_CAF1 13934 93 - 1 GAAUGCGGCCGCCUAUCAGAAUGCCGCUGUGGCCGCCGGACAGGGUGGUU---ACGGCGGAGCAGCAGGAGC---GGGCGCUGGC------GCUCCCUCUGGCCC ......((((.............((((((((((((((......)))))))---))))))).......((((.---(((((....)------)))).)))))))). ( -47.80) >DroAna_CAF1 4533 84 - 1 GAAUGCUGCUGCCUACCAAAAUGCUGCUGUGGCUGCCGGCCAGGGUGGCU---AUGC---AGCGGCCGGCGCCGGGGGCACUGGC------UC------CGG--- ....((((((((.((.......((..((.((((.....)))).))..)))---).))---))))))(((.(((((.....)))))------.)------)).--- ( -43.41) >DroPer_CAF1 4794 81 - 1 AAAUGCGGCUGCCUACCAAAACGCUGCUGCGGCUGCUGGCCAAGGCGGCG---GCUAUGCAGCAACCGGG---------UCUGGC------------UCUGGGUC ..((.(((..(((.(((.....(((((.((.((((((......)))))).---))...))))).....))---------)..)))------------.))).)). ( -35.30) >consensus GAAUGCGGCCGCCUAUCAAAAUGCUGCUGUGGCUGCCGGCCAGGGUGGCU___AUGA_GCAGCAGCCGGCGC___GGGCGCUGGC______GC____UCUGGC_C ....(((((.((..........)).))))).((((((......))))))...............(((((.((.....)).))))).................... (-20.67 = -20.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:27 2006