| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,076,184 – 16,076,282 |
| Length | 98 |
| Max. P | 0.706911 |
| Location | 16,076,184 – 16,076,282 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.39 |
| Mean single sequence MFE | -36.95 |
| Consensus MFE | -19.78 |
| Energy contribution | -20.03 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.706911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16076184 98 + 23771897 GCAACACCAGCUCCG---------------CCAGCAGCAGCGGGCACAAAGUUGAUCUUGCCCAUCUUUUUGGGCUCCUCCGAGGGAAUGGGUUUGCCCAGUUUCUGGUGCAA ....((((((.((((---------------((.((....)).)))......(((.....(((((......))))).....))).))).((((....))))....))))))... ( -34.50) >DroVir_CAF1 4791 113 + 1 CCUGCUGCGGCUGCAGCAGCCGACGCAUUUGGCCCGGCGGCGGGCACAAAGUUUAUCUUGCCCAUUUUUUUCGGCUCCUCGGAUGGUAUGGGUUUGCCCAGCUUCUGAUGCAG .((((..(((..((.((.((((..((.....)).)))).))(((((..(((.....)))((((((....(((((....)))))....)))))).))))).))..)))..)))) ( -41.60) >DroSim_CAF1 11161 98 + 1 GCAACACCAGCUCCG---------------CCAGCAGCAGCGGGCACAAAGUUGAUCUUGCCCAUCUUUUUGGGUUCCUCCGAGGGAAUGGGUUUGCCCAGCUUCUGGUGCAA ....((((((....(---------------((.((....)).)))...((((((..(..((((((..(((((((....)))))))..))))))..)..))))))))))))... ( -37.70) >DroEre_CAF1 5334 113 + 1 ACAACAGCAGCUCCUCCUGCCCCGCCAGCCCCAACAGCAGCGGGCACAAAGUUGAUUUUGCCCAUCUUUUUGGGCUCCUCCGAUGGUAUGGGUUUGCCCAAUUUCUGGUGCAA .((((.((((......))))(((((..((.......)).)))))......))))...(((((((.....((((((...((((......))))...))))))....))).)))) ( -36.50) >DroWil_CAF1 5609 110 + 1 CCAGUAGCUGCUGCAGCUGCUC---CGGCUUCUCCAGCAGCUGGAACAAAAUUAAUUUUACCCAAUUUCUUCGGUUCAUCCGAUGGUAUUGGCUUGCCCAGUUUCUGAUGCAA .(((.(((((..((((.((.((---(((((.(....).))))))).)).............(((((.((.((((.....)))).)).))))).)))).))))).)))...... ( -33.10) >DroYak_CAF1 13160 113 + 1 ACAACAGCAGCUCCGGCUGCUCCACCAGCCCCAACAGCAGCAGGCACAAAGUUAAUCUUGCCCAUCUUUUUGGGCUCCUCCGAUGGAAUGGGUUUGCCCAGUUUCUGGUGCAA .....((((((....))))))...............(((.((((.((............(((((......)))))(((......))).((((....)))))).)))).))).. ( -38.30) >consensus ACAACAGCAGCUCCGGCUGC_C___CAGC_CCAACAGCAGCGGGCACAAAGUUGAUCUUGCCCAUCUUUUUGGGCUCCUCCGAUGGAAUGGGUUUGCCCAGUUUCUGGUGCAA ..................................(((.((((((((..(((.....)))((((((.(..(((((....)))))..).)))))).))))).))).)))...... (-19.78 = -20.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:26 2006