Locus 6030

Sequence ID 3L_DroMel_CAF1
Location 16,074,929 – 16,075,049
Length 120
Max. P 0.802289
window9654

overview

Window 4

Location 16,074,929 – 16,075,049
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.39
Mean single sequence MFE -48.75
Consensus MFE -34.68
Energy contribution -33.13
Covariance contribution -1.54
Combinations/Pair 1.53
Mean z-score -1.41
Structure conservation index 0.71
SVM decision value 0.62
SVM RNA-class probability 0.802289
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16074929 120 - 23771897
GUCGUGCGCAUCCUGAAGGGAGUGAUGCGAGUGGGCUACCUGGCCAAGGGGCUGCUGCUCCACGGCGACAACGCCGUCGAGCUGGUCGUCCUUUGCGCGGAGAAGCCGACUUCGGGUCUU
.......((.(((.....)))))(((.(((((.((((.(.(.((((((((((.(((((((.((((((....)))))).)))).))).)))))))).)).).).)))).)).))).))).. ( -56.10)
>DroVir_CAF1 3795 120 - 1
GUGGUACGCAUCUUGAAGGGCGUCAUGCGUGUCGGUUACUUGGCCAAGGGACUCUUGCUUCACGGCGACACAGCUGUCGAGCUAGUCGUCCUCUGUGCGGAAAAGCCAACGACAAGUCUG
..(..((((((..((.....))..))))))..)((((..((.((((..((((.((.((((.(((((......))))).)))).))..))))..)).)).))..))))............. ( -42.60)
>DroGri_CAF1 3658 120 - 1
GUGGUGCGCGUCCUCAAGGGCGUUAUGCGUGUCGGCUAUUUGGCCAAGGGAUUAUUGCUGCACGGCGACACCGCCGUCGAGCUGGUCGUCCUCUGUGCGGAGAAGCCGACGACGAGUCUG
.......((((((....))))))....((((((((((.(((.((((..((((.((((((..((((((....))))))..))).))).))))..)).)).))).))))))).)))...... ( -52.50)
>DroWil_CAF1 3634 120 - 1
AUAGUACGCAUUCUCAAGGGUGUUAUGCGAGUUGGUUAUUUGGCCAAAGGAUUGCUGCUCCAUGGUGAUAGUGCCGUUGAGUUGGUUGUUCUCUGUGCGGAGAAACCAACAGCUGGAUUG
.((((.(((((.((....))....))))).(((((((.(((.((((.(((((.(((((((.(((((......))))).))).)))).))))).)).)).))).))))))).))))..... ( -41.20)
>DroMoj_CAF1 3467 120 - 1
GUGGUGCGCAUCCUGAAGGGUGUCAUGCGUGUUGGCUUCUUGGCCAAGGGACUGCUGCUGCAUGGUGACACAGCGGUCGAACUGGUUGUUCUCUGUGCAGAGAAGCCAACGAUAAGUCUG
...(((.((((((....)))))))))...((((((((((((.((((...((((((((.....((....))))))))))((((.....))))..)).)).))))))))))))......... ( -49.20)
>DroAna_CAF1 2782 120 - 1
GUGGUGCGCAUCUUGAAGGGCGUGAUGCGGGUGGGCUACUUGGCUAAGGGCCUCCUACUGCACGGCGACAAUGCCGUGGAGCUGGUGGUGUUGUGUGCGGAGAAGCCGACGGCUGGGCUG
..(((.((((((.((.....)).)))))..((.((((.(((.((..((.(((.((..((.((((((......)))))).))..)).))).))....)).))).)))).))....).))). ( -50.90)
>consensus
GUGGUGCGCAUCCUGAAGGGCGUCAUGCGUGUCGGCUACUUGGCCAAGGGACUGCUGCUGCACGGCGACACAGCCGUCGAGCUGGUCGUCCUCUGUGCGGAGAAGCCAACGACAAGUCUG
......(((((((.....))....))))).((.((((.(((.((((.(((((.((((((..(((((......)))))..))).))).))))).)).)).))).)))).)).......... (-34.68 = -33.13 +  -1.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:23 2006