Locus 603

Sequence ID 3L_DroMel_CAF1
Location 1,756,943 – 1,757,063
Length 120
Max. P 0.948743
window922

overview

Window 2

Location 1,756,943 – 1,757,063
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.19
Mean single sequence MFE -39.92
Consensus MFE -27.72
Energy contribution -28.37
Covariance contribution 0.64
Combinations/Pair 1.33
Mean z-score -2.67
Structure conservation index 0.69
SVM decision value 1.38
SVM RNA-class probability 0.948743
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1756943 120 - 23771897
UUCAGGAGACCCCAACAUCGUGGGGAGAGAUGGAUCUGUGCCCAUUAUGGUUCUGCUAGUGCCAUUAAUUAAUAAGGAUCACCUGCAUCAUUUCACGCACUCCAUGAAGGUCUGUCUCGU
.........(((((......))))).(((((((((((((((.....((((...(((..(((((.(((.....)))))..)))..))))))).....)))).......))))))))))).. ( -33.71)
>DroVir_CAF1 890 119 - 1
-CCAGGUGAUCCCAACAUUGUCGGCCGCGACGGCUCAGUGCCCAUAAUGGUGCUGCUGGUGCCACUCAUCAACAAGGAUCAUCUGCAUCACUUUACGCAUUCAAUGAAGGUGAAUAUUCC
-.((((((((((.......((((....))))((((((((((((.....)).)).))))).)))............))))))))))..(((((((.((.......)))))))))....... ( -40.30)
>DroPse_CAF1 872 118 - 1
UGCAGGUGAUCCCAACAUUGUGGGCAGGGAUGGGUCCGUGCCCAUAAUGGUACUGUUAGUGCCGCUAAUCAACAAGGACCAUCUUCAUCAUUUUACGCAUUCAAUGAAGGUGAGUCC--A
....((((.......(((((((((((.(((....))).)))))))))))((((.....)))))))).........(((((((((((((...............))))))))).))))--. ( -46.26)
>DroGri_CAF1 1269 120 - 1
UACAGGUGAUCCGAAUAUUGUGGGUCGUGAUGGUUCAGUGCCUAUAAUGGUGCUAUUGGUGCCGCUGAUUAACAAGGAUCAUCUGCAUCACUUCACACAUUCAAUGAAAGUAAGUCUCUG
..((((((((((....(((((((((..(((....)))..)))))))))((..(.....)..))............))))))))))....((((((.........)).))))......... ( -34.10)
>DroMoj_CAF1 942 119 - 1
-GUAGGUGAUCCAAACAUUGUGGGCCGUGAUGGUUCAGUGCCCAUAAUGGUGUUGUUGGUGCCUUUGAUUAACAAAGAUCACCUACAUCACUUUACGCAUUCAAUGAAGGUAAGUUUUCU
-((((((((((....((((((((((..(((....)))..))))))))))...((((((((.......)))))))).))))))))))....(((((.........)))))........... ( -40.70)
>DroPer_CAF1 872 118 - 1
UGCAGGUGAUCCCAACAUUGUGGGCAGGGAUGGGUCUGUGCCCAUAAUGGUACUGUUAGUGCCGCUAAUCAACAAGGACCAUCUUCAUCAUUUUACGCAUUCAAUGAAGGUGAGUCC--A
....((((.......(((((((((((.(((....))).)))))))))))((((.....)))))))).........(((((((((((((...............))))))))).))))--. ( -44.46)
>consensus
UGCAGGUGAUCCCAACAUUGUGGGCAGGGAUGGGUCAGUGCCCAUAAUGGUGCUGUUAGUGCCGCUAAUCAACAAGGAUCAUCUGCAUCACUUUACGCAUUCAAUGAAGGUGAGUCU__A
..((((((((((....(((((((((..(((....)))..)))))))))(((((.....)))))............))))))))))................................... (-27.72 = -28.37 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:24 2006