Locus 6028

Sequence ID 3L_DroMel_CAF1
Location 16,071,334 – 16,071,454
Length 120
Max. P 0.608493
window9649

overview

Window 9

Location 16,071,334 – 16,071,454
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.96
Mean single sequence MFE -37.90
Consensus MFE -25.58
Energy contribution -27.02
Covariance contribution 1.44
Combinations/Pair 1.24
Mean z-score -1.78
Structure conservation index 0.67
SVM decision value 0.15
SVM RNA-class probability 0.608493
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16071334 120 + 23771897
GGGUUAAGGUGCAGCAUCUCAACUUAGAGCGCGGAAUGCAGGAGGAAUGUCUGAACACGGGCUUAUUCCUCACGGCAAAGCAACAGCUCGAAGAGGAGAAAGACUGCCAAGAAAAAGAGG
........(.(((((.((((..(((.((((...(..(((..((((((((((((....)))))..)))))))...)))...)....)))).)))..))))..).)))))............ ( -36.80)
>DroSec_CAF1 231 120 + 1
GGGUUAAGGUGCAGCAUCUCAACUUGGAGCGCGGAAUGCAGGAGGAAAGCCUGAACACGGGCUUAUUCCGCACGGCAAAGCGGCAGUUCGAAGUGGAGGAAGAUUGCCAGGAAGAAGAGG
.......(((......((((.((((.((((((.(..(((.((((..(((((((....))))))).)))).....)))...).)).)))).)))).))))......)))............ ( -37.90)
>DroSim_CAF1 6393 120 + 1
GGGUUAAGGUGCAGCAUCUCAACUUGGAGCGCGGAAUGCGGGAGGAAAGCCUGAACACGGGCUUAUUCCGCAAGGCAAAGCAGCAGCGCGAAGAUGAGGAAGAUUGCCAGGAUGAAGAGG
..(((..(((......(((((.(((...((((....(((((((...(((((((....))))))).)))))))..((......)).)))).))).)))))......)))..)))....... ( -39.70)
>DroEre_CAF1 225 117 + 1
GGGUAAGGGUGCAGCAUCUCAACUUGGAGCGCGGAAUGCAGGAGGAUAGGCAGAAC---AGCUUAUUCAUCACGGCAAAACGGCAGCUCGAAGCGGAGGAAGACUGUCUGGAAAGCGAAG
.......((.(((((.((((..(((.((((((.(..(((..((((((((((.....---.)))))))).))...)))...).)).)))).)))..))))..).))))))........... ( -36.00)
>DroYak_CAF1 6458 117 + 1
GGGUUAAGGUGCAGCAUCUCAAUUUGGAGCGCGGAAUGCAGGAGGAUAGACUGAAU---GGUUUAUUUCUCACGGCAAGGGAGCAGCUCCAAGCGGAGGAAGACUGUCUGGAACACGACG
..(((..((.(((((.((((..((((((((((....(((..(((((((((((....---)))))).)))))...))).....)).))))))))..))))..).))))))..)))...... ( -39.10)
>consensus
GGGUUAAGGUGCAGCAUCUCAACUUGGAGCGCGGAAUGCAGGAGGAAAGCCUGAACACGGGCUUAUUCCUCACGGCAAAGCAGCAGCUCGAAGAGGAGGAAGACUGCCAGGAAAAAGAGG
..........(((((.((((..(((.((((((.(..(((..(((((.((((((....))))))...)))))...)))...).)).)))).)))..))))..).))))............. (-25.58 = -27.02 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:18 2006