Locus 6026

Sequence ID 3L_DroMel_CAF1
Location 16,068,893 – 16,069,013
Length 120
Max. P 0.835600
window9646

overview

Window 6

Location 16,068,893 – 16,069,013
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.83
Mean single sequence MFE -36.10
Consensus MFE -33.60
Energy contribution -32.83
Covariance contribution -0.77
Combinations/Pair 1.14
Mean z-score -1.87
Structure conservation index 0.93
SVM decision value 0.73
SVM RNA-class probability 0.835600
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16068893 120 - 23771897
GAGCAACAGCGCUCCGACAAAGGAGGAUGUGCUGAAGAACGUCAAAUACGAGUAUGGCAGCAUUGAUGUAGAUGCAGUGAUGAAGAAGCUGGCACAGGAUGGCUUCUCCAACAUCAAGCU
.(((..(((((((((..(...)..))).))))))......((((.((....)).)))).(((((......)))))..(((((.((((((((........))))))))....))))).))) ( -35.10)
>DroSim_CAF1 3934 120 - 1
GAGUAACAGCGCUCCGACAAAGGAGGAUGUGCUAAAGAACGUCAAAUACGAGUUUGGCAGCAUCGAUGUAGAUGCAGUGAUGAAGAGGCUGACGCAAGAUGGCUUCUCCAACAUUAAGCU
.....(((.(.((((......))))).)))(((.......(((((((....))))))).(((((......)))))((((.((.((((((((.(....).)))))))).)).)))).))). ( -39.30)
>DroYak_CAF1 3997 120 - 1
AAGUAAUAGCGCUCCGACCAAGGAGGAUGUGCUGAAGAACGUUAAAUACGAGUAUGGCAGCAUCGAUGUAGAGGCAGUCAUGAAGAGGCUAACCCAGGAUGGCUUCUCCAACAUCAAGCU
.......(((.((((......))))(((((.........(((.....)))..((((((.((.((......)).)).)))))).((((((((.(....).))))))))...)))))..))) ( -33.90)
>consensus
GAGUAACAGCGCUCCGACAAAGGAGGAUGUGCUGAAGAACGUCAAAUACGAGUAUGGCAGCAUCGAUGUAGAUGCAGUGAUGAAGAGGCUGACACAGGAUGGCUUCUCCAACAUCAAGCU
.......(((.((((......))))((((((((.......((((.((....)).)))).(((((......))))))))..((.((((((((.(....).)))))))).)))))))..))) (-33.60 = -32.83 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:15 2006