Locus 602

Sequence ID 3L_DroMel_CAF1
Location 1,751,065 – 1,751,185
Length 120
Max. P 0.535409
window921

overview

Window 1

Location 1,751,065 – 1,751,185
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.67
Mean single sequence MFE -46.75
Consensus MFE -29.76
Energy contribution -28.38
Covariance contribution -1.38
Combinations/Pair 1.42
Mean z-score -1.85
Structure conservation index 0.64
SVM decision value 0.00
SVM RNA-class probability 0.535409
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1751065 120 - 23771897
CUGGCCAAGGCUCUGGCCGUGCAGUGCAAGGUGUUCAAUUGCUCUGACGGUCUGGACUAUAAGGCGAUGGGCAAGUUCUUCAAGGGAUUGGCUUCGUGCGGUGCCUGGGCCUGCUUCGAU
..((((.((((.((((((((.(((.((((.........)))).)))))))))...........(((..((((.((((((....)))))).))))..))))).)))).))))......... ( -45.60)
>DroVir_CAF1 8261 120 - 1
UUGGCCAAGGCGCUAGCUGUGCAGUGCAAGGUGUUCAACUGCUCGGAUGGCUUGGACUACAAGGCGAUGGGCAAGUUCUUUAAGGGACUGGCCUCGUGUGGCGCCUGGGCAUGCUUCGAU
...(((.(((((((((((.((.(((.((((.(((((........))))).)))).))).)).))).((((((.((((((....)))))).))).))).)))))))).))).......... ( -51.50)
>DroPse_CAF1 9075 120 - 1
CUGGCCAAAGCCCUGGCCGUCCAGUGCAAGGUCUUCAACUGCUCCGACGGACUGGACUACAAGGCCAUGGGCAAGUUCUUCAAGGGCCUGGCCUCGUGUGGCGCCUGGGCCUGCUUUGAC
..((((...((((((((((((((((.(..((............))...).))))))).....))))).))))...........((((...(((......))))))).))))......... ( -48.20)
>DroGri_CAF1 9065 120 - 1
CUGGCCAAGGCUUUGGCUGUCCAAUGUAAAGUGUUUAAUUGCUCGGAUGGUCUGGAUUACAAAGCCAUGGGCAAGUUCUUUAAGGGACUUGCUUCAUGUGGUGCCUGGGCCUGUUUCGAU
..((((.((((...((((((((...((((.........))))..))))))))...........((((((((((((((((....)))))))))))...))))))))).))))......... ( -45.10)
>DroWil_CAF1 8224 120 - 1
CUGGCAAAGGCAUUGGCUGUCCAAUGCAAAGUGUUCAAUUGCUCAGAUGGCCUUGACUACAAGGCCAUGGGUAAAUUCUUCAAGGGACUUGCCUCGUGCGGUGCUUGGGCCUGUUUCGAU
..(((((..(((((((....))))))).....((((..(((((((..((((((((....)))))))))))))))...(.....))))))))))(((.((((.((....))))))..))). ( -44.70)
>DroMoj_CAF1 8327 118 - 1
UUAGCUAAGGCACUCGCUGUGCAAUGUAAAGUCUUUAACUGCUCCGACGGCCUGGACUACAAGGCCAUGGGCAAGUUCUUUAAGGGCUUGGCCUCCUGCGGUGCCUGGGCUUGCU--GAC
(((((....((((.....))))......((((((...(((((......(((((........)))))..((.(((((((.....))))))).))....)))))....)))))))))--)). ( -45.40)
>consensus
CUGGCCAAGGCACUGGCUGUCCAAUGCAAAGUGUUCAACUGCUCCGACGGCCUGGACUACAAGGCCAUGGGCAAGUUCUUCAAGGGACUGGCCUCGUGCGGUGCCUGGGCCUGCUUCGAU
..((((.((((.((((((((.(...(((..((.....)))))...)))))))...........((.((((((.((((((....)))))).))).))))))).)))).))))......... (-29.76 = -28.38 +  -1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:23 2006