Locus 6016

Sequence ID 3L_DroMel_CAF1
Location 16,054,215 – 16,054,335
Length 120
Max. P 0.854725
window9622

overview

Window 2

Location 16,054,215 – 16,054,335
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.42
Mean single sequence MFE -35.42
Consensus MFE -31.22
Energy contribution -31.74
Covariance contribution 0.52
Combinations/Pair 1.05
Mean z-score -1.42
Structure conservation index 0.88
SVM decision value 0.80
SVM RNA-class probability 0.854725
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16054215 120 + 23771897
UUUGGGAACAUGACGCUUGAACAAGACGGCCCACAAAUGCCGACGGAUCGAUACUUCUUUUGACCAGGCGGAAUGAGUUGCGUUUCCGAAAUGGAAACACCACUUAUUAGAAUUCCGGAA
(((((((......((((((..(((((((((........)))).......((....)))))))..)))))).(((((((.(.((((((.....)))))).).)))))))....))))))). ( -36.20)
>DroSec_CAF1 4241 120 + 1
UUAGGGAACAUGACGCUUGAACAAGACGGCCCACAGAUGCCGACGGAUCGAUAUUUCUUUUGACCAGGCGGAAUGAGUUGCGUUUCCGAAAUGGAAACACCACUUAUUAGAAUUCCGGAA
....((((.....((((((..(((((((((........))))..(((.......))))))))..)))))).(((((((.(.((((((.....)))))).).)))))))....)))).... ( -34.70)
>DroSim_CAF1 2755 120 + 1
UUAGGGAACAUGACGCUUGAACAAGACGGCCCACAGAUGCCGACGGAUCGAUAUUUCUUUUGACCAGGCGGAAUGAGUUGCGUUUCCGAAAUGGAAACACCACUUAUUAGAAUUCCGGAA
....((((.....((((((..(((((((((........))))..(((.......))))))))..)))))).(((((((.(.((((((.....)))))).).)))))))....)))).... ( -34.70)
>DroEre_CAF1 3352 120 + 1
UUUGGGAACAUGACGCUGGAACAAGAAGGUCCACAAAUGCCGACGGAUCGAUAUUUCUUUUGACCAGGCGGGAUGAGUUGGGUUUCCGAAAUGGAAACACCACUUAUCAGGAUUCCGGAA
(((((((.(....((((((..(((((.(((((............)))))((....))))))).))).))).(((((((.((((((((.....)))))).)))))))))..).))))))). ( -38.00)
>DroYak_CAF1 3272 120 + 1
UUUGGGAACAUGACGCUGGAACAAGAAGGUCCACAGAUGCCGACAGAUCGAUAUUUCUUUUGACCAGGCGGGAUGAGUUGGGUUUCCGAAACGGAAACACCACUUAUAAGGAUUCCGGAA
(((((((.(....((((((....((((((......(((........)))......))))))..))).)))..((((((.(((((((((...))))))).))))))))...).))))))). ( -33.50)
>consensus
UUUGGGAACAUGACGCUUGAACAAGACGGCCCACAGAUGCCGACGGAUCGAUAUUUCUUUUGACCAGGCGGAAUGAGUUGCGUUUCCGAAAUGGAAACACCACUUAUUAGAAUUCCGGAA
(((((((......((((((..(((((.(((........)))........((....)))))))..)))))).(((((((.(.((((((.....)))))).).)))))))....))))))). (-31.22 = -31.74 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:51 2006