| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,053,375 – 16,053,495 |
| Length | 120 |
| Max. P | 0.859691 |
| Location | 16,053,375 – 16,053,495 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.68 |
| Mean single sequence MFE | -27.86 |
| Consensus MFE | -24.36 |
| Energy contribution | -23.76 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16053375 120 - 23771897 GCCACCGGCAGCUUGUUUGAAUUAUUUGUUCACUGAUAAUGAAGAACUUCGUUCGGGAAGUUCACAAUUUUUUACAGACUUUACGUUAAGUCUUUUAUUACUCAUUCAGCUCGGGUUGCA ((.(((.(.((((....(((((.....))))).(((((((((((((((((......)))))))............((((((......))))))))))))).)))...))))).))).)). ( -33.00) >DroSec_CAF1 3404 117 - 1 GCCACCGGCAGCUUGUUUGAACUAUUUAUUCACUGAUAAUGAAGAACUUCGUUCGGGAAGUUCACAACUUUUUACAGACUUUACGUUAAGUCU---AUUACUCAUUCAGCUUGGGUUGCG ((.(((.(.((((.(..(((.......................(((((((......)))))))............((((((......))))))---.....)))..)))))).))).)). ( -28.80) >DroSim_CAF1 1918 117 - 1 GCCACCGGCAGCUUGUUUGAACUAUUUAUUCACUGAUAAUGAAGAACUUCGUUCGGGAAGUUCACAACUUUUUACAGACUUUACGUUAAGUCU---AUUACUUAUUCAGCUUGGGUUGCG ((.(((.(.((((.(((((((((......((.((((..(((((....))))))))))))))))).))).......((((((......))))))---...........))))).))).)). ( -27.90) >DroEre_CAF1 2515 117 - 1 GCCACCUGCAGCUUGUUUAAACUAUUUUUUCACUGAUAAUGAAGAACUUCGUUCAGGGAGUUCCAGAAUUUUUACGGACUUUACGUUGAGUCU---UUUACUUAUUCAGCUCGGGUUUCA ...(((((.((((..............((((.((((..(((((....))))))))))))).....((((......((((((......))))))---.......))))))))))))).... ( -25.92) >DroYak_CAF1 2435 117 - 1 GCCACCUGCAGCUUGUUUGAACUAUUUUUUCACUGAUAAUGAAGAACUUCGUUCAGGAAGUUCCAGAUUUUUAACGGACUUUACGUUAAUUCU---UUUUCUUAUUCAGCUUGGGUUUCA ...(((((.((((((((((((.......))))..)))))(((((((((((......))))))).(((...((((((.......)))))).)))---........)))))))))))).... ( -23.70) >consensus GCCACCGGCAGCUUGUUUGAACUAUUUAUUCACUGAUAAUGAAGAACUUCGUUCGGGAAGUUCACAACUUUUUACAGACUUUACGUUAAGUCU___AUUACUUAUUCAGCUUGGGUUGCA ((.(((.(.((((.(..(((.......................(((((((......)))))))............((((((......))))))........)))..)))))).))).)). (-24.36 = -23.76 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:50 2006