Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,051,598 – 16,051,702 |
Length | 104 |
Max. P | 0.604450 |
Location | 16,051,598 – 16,051,702 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.41 |
Mean single sequence MFE | -37.13 |
Consensus MFE | -22.93 |
Energy contribution | -23.43 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.23 |
Mean z-score | -1.36 |
Structure conservation index | 0.62 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16051598 104 - 23771897 UAUCCGGGCCAGAGCAGCGGCGAGGUGAUGUGGAGCCACACGACGCAGUCGUUCUGUGUCGGCUACAUGGCAACCAACCAGAGGGUGCCAAAGGUUCGUACACC---------------- ...((..(((........)))..))...(((((((((...((((((((.....))))))))......(((((.((.......)).)))))..))))).))))..---------------- ( -38.70) >DroPse_CAF1 22545 120 - 1 UAUCCGAAGCAGAGCAGCGGCGAGGUGAUGUGGAGCCAUACGACGCAAUCGUUUUGCGUUGGCUACAUGGCGACAACGCAGAAAGUGCCAAAGGUUUGUAUGCCAAUGCGAUGCUAUGCC .......((((..(((..((((..(((...((..(((((.((((((((.....)))))))).....)))))..)).)))......))))...(((......)))..)))..))))..... ( -41.10) >DroWil_CAF1 2 92 - 1 UAUCCGAAACAGGGCAGCGGCGAGGUGAUGUGGAGCCAUACAACGCAAUCAUUUUGCGUCGGAUACAUGGCGACAACGCAGAAAGUGCCAAA---------------------------- ............((((((((((((((((((((...........))).))))))))))((((.........))))..)))......))))...---------------------------- ( -26.50) >DroMoj_CAF1 4323 109 - 1 UAUCCCAAACAGAGCUGUGGCGAGGUGAUGUGGAGCCAUACGACGCAAUCAUUCUGUGUUGGGUACAUGGCAACCACGCAAAAAGUGCCAAAGGUUGGUGCAA---AGCCAU-------- ................(((((....((.(((((.(((((.(((((((.......))))))).....)))))..)))))))....(..(((.....)))..)..---.)))))-------- ( -33.70) >DroAna_CAF1 2179 100 - 1 UAUCCGAGCCAGAGCAGCGGGGAGGUGAUGUGGAGCCACACGACGCAGUCAUUUUGUGUCGGCUACAUGGCCACCACCCAGAAGGUGCCAAAGGUUCGA----C---------------- ....((((((...(((.(.(((.((((.((((.((((....(((((((.....))))))))))).))))..)))).)))....).)))....)))))).----.---------------- ( -41.70) >DroPer_CAF1 26684 120 - 1 UAUCCGAAGCAGAGCAGCGGCGAGGUGAUGUGGAGCCAUACGACGCAAUCGUUUUGCGUUGGCUACAUGGCGACAACGCAGAAAGUGCCAAAGGUUUGUAUGCCAAUGCGAUGCUAUGCC .......((((..(((..((((..(((...((..(((((.((((((((.....)))))))).....)))))..)).)))......))))...(((......)))..)))..))))..... ( -41.10) >consensus UAUCCGAAACAGAGCAGCGGCGAGGUGAUGUGGAGCCAUACGACGCAAUCAUUUUGCGUCGGCUACAUGGCGACAACGCAGAAAGUGCCAAAGGUUCGUA__CC________________ ..................((((...(..((((..(((((.((((((((.....)))))))).....))))).....))))..)..))))............................... (-22.93 = -23.43 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:49 2006