Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,043,366 – 16,043,463 |
Length | 97 |
Max. P | 0.982642 |
Location | 16,043,366 – 16,043,463 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.76 |
Mean single sequence MFE | -19.45 |
Consensus MFE | -18.29 |
Energy contribution | -17.48 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.20 |
Mean z-score | -2.22 |
Structure conservation index | 0.94 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16043366 97 - 23771897 ACACAGAAGACGGCUGGUCAA----CUAGGUGUUCUAUAUGGUGGCCAAAAGGGAAAGGCAAUUAUAAAAGUAAAGAUUAAACUAUAAAGGUGAGAGAAAC .(((....((((.((((....----)))).))))((.((((((.(((..........)))..((((....)))).......)))))).)))))........ ( -18.20) >DroSec_CAF1 13786 97 - 1 ACACAGAAGACGGCUAGUCAA----CUAGGUGUUUUAUAUGGUGGCCAAAAGGGAAAGGCAAUCAUAAAAGUAAAGAUUAAACUAUAAAGGUGAGAGAAAC .(((..((((((.((((....----)))).)))))).((((((.(((..........))).)))))).......................)))........ ( -21.40) >DroSim_CAF1 11299 97 - 1 ACACAGAAGACGGCUAGUCAA----CUAGGUGUUCUAUAUGGUGGCCAAAAGGGAAAGGCAAUCAUAAAAGUAAAGAUUAAACUAUAAAGGUGAGAGAAAC .(((....((((.((((....----)))).))))...((((((.(((..........))).)))))).......................)))........ ( -19.20) >DroYak_CAF1 36226 100 - 1 ACACAGAAGACAGCUAGUCAACUAACUAGGUGUUCUAUAUGAUGGCCAAAAGGGAAAGGCAAUUAUAAAAGUAA-GAUUAAUAUAUAAGGGUGAUAGAAAC .(((....((((.(((((......))))).))))...((((((.(((..........))).)))))).......-...............)))........ ( -19.00) >consensus ACACAGAAGACGGCUAGUCAA____CUAGGUGUUCUAUAUGGUGGCCAAAAGGGAAAGGCAAUCAUAAAAGUAAAGAUUAAACUAUAAAGGUGAGAGAAAC .(((....((((.((((........)))).))))...((((((.(((..........))).)))))).......................)))........ (-18.29 = -17.48 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:39 2006