Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,745,228 – 1,745,428 |
Length | 200 |
Max. P | 0.759441 |
Location | 1,745,228 – 1,745,348 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -34.31 |
Consensus MFE | -23.69 |
Energy contribution | -23.37 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.30 |
Mean z-score | -2.74 |
Structure conservation index | 0.69 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.566043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1745228 120 - 23771897 ACAUUGAUCCCAUGUACCAGUUCUCACUCAACUGGUACAUUAAUCUCUACAUGUACUCCAUUGAGACGGCCAACAAGUCCAAGGAUCUGCCGCGGCGCAUCAAGUUCCUGGUGGAUGGCU .....(((...(((((((((((.......)))))))))))..))).......((.(((....)))))(((((.....((....))((..(((.((.((.....)).)))))..))))))) ( -34.40) >DroVir_CAF1 2436 120 - 1 AUAUUGAUCCCAUGUACCAGUUCUCCCUCAACUGGUACAUCAACCUGUAUAUGUACUCCAUUGAAACGGCCAACAAAUCGAAGGAUCUGCCACGACGCAUCAAGUUUCUGGUCGAUGGAU ((((.......(((((((((((.......)))))))))))......))))......((((((((.........((.(((....))).))(((.((.((.....)).))))))))))))). ( -30.72) >DroGri_CAF1 2740 120 - 1 ACAUCGAUCCGAUGUACCAGUUCUCGCUGAAUUGGUACAUCAAUCUGUACAUGUACUCCAUUGAGACGGCCAACAAGUCCAAGGAUUUGCCACGUCGCAUCAAAUUCCUCGUCGAUGGCU .(((((((..(((((((((((((.....))))))))))))).....(((....)))....((((..((((...((((((....))))))....))))..)))).......)))))))... ( -43.30) >DroWil_CAF1 2427 120 - 1 AUAUAGAUCCCAUGUAUCAGUUCUCUCUGAAUUGGUAUAUUAAUCUAUAUAUGUAUUCCAUUGAGACGGCCAACAAAUCAAAAGAUUUACCCAGACGCAUUAAAUUUCUGGUGGAUGGUU ((((((((...((((((((((((.....))))))))))))..)))))))).......(((((............(((((....))))).((((((...........))))).)))))).. ( -29.40) >DroMoj_CAF1 2433 120 - 1 ACAUCGAUCCGAUGUAUCAGUUUUCACUCAACUGGUAUAUCAAUCUCUACAUGUACUCCAUUGAGACGGCAAACAAGUCGAAGGAGCUGCCGCGACGCAUUAAGUUCCUGGUCGAUGGCU .((((((((.((((((((((((.......))))))))))))..((((...(((.....))).))))((((......)))).(((((((...((...))....)))))))))))))))... ( -40.20) >DroAna_CAF1 2446 120 - 1 ACAUAGACCCCAUGUAUCAGUUCUCUCUUAACUGGUACAUAAAUCUCUACAUGUACUCCAUUGAAACGGCCAACAAGUCCAAGGACCUUCCACGACGUAUCAAGUUCCUGGUCGAUGGCU .(((.((((..(((((((((((.......)))))))))))....................((((.(((........(((....))).........))).))))......)))).)))... ( -27.83) >consensus ACAUAGAUCCCAUGUACCAGUUCUCACUCAACUGGUACAUCAAUCUCUACAUGUACUCCAUUGAGACGGCCAACAAGUCCAAGGAUCUGCCACGACGCAUCAAGUUCCUGGUCGAUGGCU .((((((((..(((((((((((.......)))))))))))....................((((..((.....((.(((....))).))......))..))))......))))))))... (-23.69 = -23.37 + -0.33)
Location | 1,745,268 – 1,745,388 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.94 |
Mean single sequence MFE | -24.13 |
Consensus MFE | -15.02 |
Energy contribution | -13.88 |
Covariance contribution | -1.14 |
Combinations/Pair | 1.26 |
Mean z-score | -3.32 |
Structure conservation index | 0.62 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1745268 120 - 23771897 CACUCAUCCAUUCUCUAUUACUCGAUCACGGAUCUUCCCAACAUUGAUCCCAUGUACCAGUUCUCACUCAACUGGUACAUUAAUCUCUACAUGUACUCCAUUGAGACGGCCAACAAGUCC ....................((((((...(((((...........))))).(((((((((((.......)))))))))))...................))))))..(((......))). ( -25.20) >DroVir_CAF1 2476 120 - 1 CACUCCUCUAUACUGUAUUAUUCCAUAACCGAUUUGCCCAAUAUUGAUCCCAUGUACCAGUUCUCCCUCAACUGGUACAUCAACCUGUAUAUGUACUCCAUUGAAACGGCCAACAAAUCG .............................(((((((.((.............((((((((((.......))))))))))((((...(((....)))....))))...))....))))))) ( -22.30) >DroGri_CAF1 2780 120 - 1 CAUUCCUCCAUUCUCUACUAUUCCAUCACCGACCUACCAAACAUCGAUCCGAUGUACCAGUUCUCGCUGAAUUGGUACAUCAAUCUGUACAUGUACUCCAUUGAGACGGCCAACAAGUCC ..............................(((............(((..(((((((((((((.....))))))))))))).)))(((...(((.(((....))))))....))).))). ( -26.60) >DroWil_CAF1 2467 120 - 1 CACUCGUCCAUAUUAUAUUAUUCGAUUACCGAUCUACCCAAUAUAGAUCCCAUGUAUCAGUUCUCUCUGAAUUGGUAUAUUAAUCUAUAUAUGUAUUCCAUUGAGACGGCCAACAAAUCA ...(((((((...(((((...(((.....)))........((((((((...((((((((((((.....))))))))))))..)))))))))))))......)).)))))........... ( -26.00) >DroMoj_CAF1 2473 120 - 1 CACUCUUCCAUUUUGUACUACUCGAUCACGGACUUGCCCAACAUCGAUCCGAUGUAUCAGUUUUCACUCAACUGGUAUAUCAAUCUCUACAUGUACUCCAUUGAGACGGCAAACAAGUCG ..(((.........((((...(((((...((......))...)))))...((((((((((((.......))))))))))))...........))))......))).((((......)))) ( -27.16) >DroAna_CAF1 2486 120 - 1 CAUUCCUCCAUUCUAUACUACUCCAUCACGGAUCUGCCCAACAUAGACCCCAUGUAUCAGUUCUCUCUUAACUGGUACAUAAAUCUCUACAUGUACUCCAUUGAAACGGCCAACAAGUCC .....................(((.....)))...(((..(((((((....(((((((((((.......))))))))))).....))))..))).(......)....))).......... ( -17.50) >consensus CACUCCUCCAUUCUAUACUACUCCAUCACCGAUCUGCCCAACAUAGAUCCCAUGUACCAGUUCUCACUCAACUGGUACAUCAAUCUCUACAUGUACUCCAUUGAGACGGCCAACAAGUCC ..............................(((..................(((((((((((.......)))))))))))...........(((...((........))...))).))). (-15.02 = -13.88 + -1.14)
Location | 1,745,308 – 1,745,428 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -27.11 |
Consensus MFE | -12.56 |
Energy contribution | -12.32 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.29 |
Mean z-score | -2.52 |
Structure conservation index | 0.46 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1745308 120 - 23771897 GAUAGAGGCCUUCCGGCUGAACUACAAGCCCGUGGCAGUCCACUCAUCCAUUCUCUAUUACUCGAUCACGGAUCUUCCCAACAUUGAUCCCAUGUACCAGUUCUCACUCAACUGGUACAU ((((((((......((((........)))).((((....))))........))))))))..........(((((...........))))).(((((((((((.......))))))))))) ( -36.50) >DroVir_CAF1 2516 120 - 1 AAUUGAGGCAUUCCGCCUUAACUACAAGCCCGUCGCAGUGCACUCCUCUAUACUGUAUUAUUCCAUAACCGAUUUGCCCAAUAUUGAUCCCAUGUACCAGUUCUCCCUCAACUGGUACAU ..(((((((.....)))))))......((..(((((((((..........)))))).((((...))))..)))..))..............(((((((((((.......))))))))))) ( -26.60) >DroGri_CAF1 2820 120 - 1 AAUCGAAGCAUUUCGUCUCAAUUACAAACCGGUUGCCAUUCAUUCCUCCAUUCUCUACUAUUCCAUCACCGACCUACCAAACAUCGAUCCGAUGUACCAGUUCUCGCUGAAUUGGUACAU .(((((.((.....))..............(((((..................................))))).........)))))...((((((((((((.....)))))))))))) ( -20.98) >DroWil_CAF1 2507 120 - 1 AAUAGAUGCUUUCCGUUUGAACUAUAAGCCAGUGGCCGUGCACUCGUCCAUAUUAUAUUAUUCGAUUACCGAUCUACCCAAUAUAGAUCCCAUGUAUCAGUUCUCUCUGAAUUGGUAUAU .............((..(((..(((((....((((.((......)).)))).))))))))..))......((((((.......))))))..((((((((((((.....)))))))))))) ( -24.10) >DroMoj_CAF1 2513 120 - 1 GAUCGAGGCAUUCCGUCUGAAUUACAAGCCCGUUGCGGUCCACUCUUCCAUUUUGUACUACUCGAUCACGGACUUGCCCAACAUCGAUCCGAUGUAUCAGUUUUCACUCAACUGGUAUAU ((((((((((.(((((.(((..(((((((.....))((.........))...)))))....)))...)))))..)))).....))))))..(((((((((((.......))))))))))) ( -31.00) >DroAna_CAF1 2526 120 - 1 GAUCGAGACCUUCCGUCUUAACUACAAGCCCGUGGCUGUGCAUUCCUCCAUUCUAUACUACUCCAUCACGGAUCUGCCCAACAUAGACCCCAUGUAUCAGUUCUCUCUUAACUGGUACAU (((((((((.....)))))...((((.(((...)))))))..............................)))).................(((((((((((.......))))))))))) ( -23.50) >consensus AAUCGAGGCAUUCCGUCUGAACUACAAGCCCGUGGCAGUGCACUCCUCCAUUCUAUACUACUCCAUCACCGAUCUGCCCAACAUAGAUCCCAUGUACCAGUUCUCACUCAACUGGUACAU .....((((.....)))).........((.....)).......................................................(((((((((((.......))))))))))) (-12.56 = -12.32 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:22 2006