Locus 6009

Sequence ID 3L_DroMel_CAF1
Location 16,041,691 – 16,041,796
Length 105
Max. P 0.508499
window9610

overview

Window 0

Location 16,041,691 – 16,041,796
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.21
Mean single sequence MFE -40.72
Consensus MFE -30.50
Energy contribution -30.73
Covariance contribution 0.23
Combinations/Pair 1.27
Mean z-score -1.44
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.508499
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16041691 105 - 23771897
UGUGGCUGCGAUGGCGGCCACAGUGGCUCCGGCACUGGUUACCCCAUUCG---------------AGGAUGGACCACCAUAGGCACCAUUCAGGCUGCUAUUUGAUGCUGACAGUGAUUU
(((((((((....)))))))))((.(((.(((((.((((....(((((..---------------..)))))...))))..((((((.....)).))))......)))))..))).)).. ( -38.30)
>DroSec_CAF1 12232 105 - 1
CGUGGCUGCGAUGGCGGCCACAGUGGCUCCGGCACUGGUUACCCCAUUCG---------------AGGAUGGACCACCAUAGGCUCCAUUCAGGCUGCUAUUCGAUGCCGACAGCGAUUU
.((((((((....))))))))(((.(((.(((((.(((.....))).(((---------------((((((((((......)).)))))))((....))..)))))))))..))).))). ( -42.40)
>DroAna_CAF1 8363 120 - 1
UGUGGCUGCAAUGGCGGCCACUGUGGCUCCAGCACUUGACACUCCACUGGUACUAGUGCUACUAGCUGGUGUGUUGCCAUAAGCUCCACUGAGGCUACUAUUCGAGGCCGACAGGGACUU
.((((((((....))))))))((((((..........(((((.((((((((((....).)))))).))).)))))))))))((.(((.(((.((((.(.....).))))..)))))))). ( -48.60)
>DroSim_CAF1 9650 105 - 1
CGUGGCUGCGAUGGCGGCCACAGUGGCUCCGGCACUGGUUACCCCAUUCG---------------AGGAUGGACCACCAUAGGCUCCAUUCAGGCUGCUAUUCGAUGCCGACAGCGAUUU
.((((((((....))))))))(((.(((.(((((.(((.....))).(((---------------((((((((((......)).)))))))((....))..)))))))))..))).))). ( -42.40)
>DroEre_CAF1 12092 105 - 1
CGUGGCUGCGAUGGCCGCCACAGUGGCUCCGGCACUGGUUACUCCGUUGG---------------AGGAUGGACCACCAUAGACUCCAUUCAGGCUGCUGUUUGAUGCCGACAACGAUUU
.(((((.((....)).)))))........(((((..((.....))..(((---------------((.((((....))))...))))).((((((....))))))))))).......... ( -36.60)
>DroYak_CAF1 34633 105 - 1
CGUAGCUGCGAUGGCCGCCACAGUGGCUCCGGCACUGGUUACUCCAUUUG---------------AGGAUGAACCACCAUAGGCUCCAUUCAGGCUGCUAUUUGAUGCAGACAGCGAUUU
(((.(((((((((((.(((..(((((..((.....(((((..(((.....---------------.)))..))))).....))..)))))..))).))))))....)))).).))).... ( -36.00)
>consensus
CGUGGCUGCGAUGGCGGCCACAGUGGCUCCGGCACUGGUUACCCCAUUCG_______________AGGAUGGACCACCAUAGGCUCCAUUCAGGCUGCUAUUCGAUGCCGACAGCGAUUU
.(((((...((((((((((.(((((.(....)))))).............................(((((((((......)).))))))).))))))))))....))).))........ (-30.50 = -30.73 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:38 2006