Locus 6008

Sequence ID 3L_DroMel_CAF1
Location 16,041,275 – 16,041,376
Length 101
Max. P 0.564776
window9609

overview

Window 9

Location 16,041,275 – 16,041,376
Length 101
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 86.10
Mean single sequence MFE -43.20
Consensus MFE -34.70
Energy contribution -35.32
Covariance contribution 0.61
Combinations/Pair 1.13
Mean z-score -1.82
Structure conservation index 0.80
SVM decision value 0.06
SVM RNA-class probability 0.564776
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16041275 101 - 23771897
CACCACCAGGUGGCCAUAGUGAUG------ACCACCGCUUGUGGCCGCCGAACCCGAAGCAGAUGA---------AGUGGCGGUGGGCUGGAGCUGCAGAUAGUAGCGAUUGCCCU
.(((.((((((((((((((((...------.....))).)))))))))).....(......)....---------..))).)))((((....(((((.....)))))....)))). ( -43.20)
>DroSec_CAF1 11822 101 - 1
CACCACCAGGUGGCCAUAGUGAUG------ACCACCGCUUGUGGCCGCCGAACCCGAAGCAGAUGA---------ACUGGCAGUGGGUUGGAGCUGCAGAUAGUAGCGAUUGCCCU
.....((.(((((((((((((...------.....))).)))))))))).((((((..((((....---------.)).))..)))))))).(((((.....)))))......... ( -40.70)
>DroAna_CAF1 7938 110 - 1
CACCAUCAGGUGGCUAUAAUGAUGGUGGUGGCCUCCACCGGACGCCGGC------GAAGCGGAUGAAGCUGUGGCAGAGGCGGUGGGCUGCAGUUGCAGAUAGUAGCGGUUGCCGU
.(((((((...........)))))))((..(((.(((((....(((.((------.((((.......))).).))...))))))))(((((.(((...))).))))))))..)).. ( -44.10)
>DroSim_CAF1 9240 101 - 1
CACCACCAGGUGGCCAUAGUGAUG------ACCACCGCUUGUGGCCGCCGAACCCGAAGCAGAUGA---------ACUGGCGGUGGGCUGGAGCUGCAGAUAGUAGCGAUUGCCCU
.(((.((((((((((((((((...------.....))).)))))))))((....))..........---------.)))).)))((((....(((((.....)))))....)))). ( -43.70)
>DroEre_CAF1 11676 101 - 1
CACCACCAGGUGGCCAUAGUGAUG------ACCACCGCUUGUGGCCGCCGAACCCGAAGCAGAUGA---------AGUGGCGGUGGGCUGGAGCUGCAGAUAGUAGCGACUGCCCU
.(((.((((((((((((((((...------.....))).)))))))))).....(......)....---------..))).)))((((.(..(((((.....)))))..).)))). ( -45.00)
>DroYak_CAF1 34205 101 - 1
CACCACCAGGUGGCCAUAGUGAUG------ACCACCGCUUGUGGCCGCCGAACCCGAAGCAGAUGA---------AGAGGCGGUGGGCUGGAGCUGCAGGUAGUAGCGAUUGCCCU
.(((.((.(((((((((((((...------.....))).)))))))))).....(......)....---------...)).)))((((....(((((.....)))))....)))). ( -42.50)
>consensus
CACCACCAGGUGGCCAUAGUGAUG______ACCACCGCUUGUGGCCGCCGAACCCGAAGCAGAUGA_________AGUGGCGGUGGGCUGGAGCUGCAGAUAGUAGCGAUUGCCCU
((((.((.(((((((((((((.((........)).))).))))))))))..........(....).............)).))))(((....(((((.....)))))....))).. (-34.70 = -35.32 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:37 2006