Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,038,067 – 16,038,174 |
Length | 107 |
Max. P | 0.736810 |
Location | 16,038,067 – 16,038,174 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 88.94 |
Mean single sequence MFE | -23.72 |
Consensus MFE | -17.78 |
Energy contribution | -19.21 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.84 |
Structure conservation index | 0.75 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16038067 107 - 23771897 GAAACUAGGAAAAUUCGUGAAAAAGCAGACAUAGAAUAGCGCGAGCAUAGGAAAAACUAUUUUUGUUUGCGUUUAAAUUUAGCAUUAAGUGCGCGACAGGAGACAGA ..............((((......(((((((.(((...((....)).(((......)))))).)))))))...........((((...))))))))..(....)... ( -22.90) >DroSec_CAF1 8610 107 - 1 GUAACUGGGAAAAUUCGUGAAAAAGCAGACAGAGGAAAGCGCGAGCAUAGGAAAAACUAUUUUUGUUUGCGUUUAAAUUUAGCGUUAAGUGCGCGACAGAAGACAGG ....(((......(((.((((...(((((((((((...((....)).(((......)))))))))))))).))))......((((.....))))....)))..))). ( -27.60) >DroSim_CAF1 6109 107 - 1 GUAACUGGGAAAAUUCGUGAAAAAGCAGACAGAGGAAAGCGCGAGCAUAGGAAAAACUAUUUUUGUUUGCGUUUAAAUUUAGCGUUAAGUGCGCGACAGAAGACAGG ....(((......(((.((((...(((((((((((...((....)).(((......)))))))))))))).))))......((((.....))))....)))..))). ( -27.60) >DroEre_CAF1 8741 98 - 1 GAAACUAGGAAAAUUUGAUUAAAAGCAGACAUAGGAAAG--CGAGCAUAGGAGAAACUAUUUUGGUUUGCGUUUAAAUUUAGCGUUAAGUGCGCGACA-------GG ..........((((((((......((((((.........--((((.((((......))))))))))))))..)))))))).((((.....))))....-------.. ( -16.80) >consensus GAAACUAGGAAAAUUCGUGAAAAAGCAGACAGAGGAAAGCGCGAGCAUAGGAAAAACUAUUUUUGUUUGCGUUUAAAUUUAGCGUUAAGUGCGCGACAGAAGACAGG ....(((.......((((......(((((((((((...((....)).(((......))))))))))))))...........(((.....))))))).......))). (-17.78 = -19.21 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:36 2006