Locus 6006

Sequence ID 3L_DroMel_CAF1
Location 16,036,144 – 16,036,237
Length 93
Max. P 0.512826
window9607

overview

Window 7

Location 16,036,144 – 16,036,237
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.52
Mean single sequence MFE -25.02
Consensus MFE -16.20
Energy contribution -17.20
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.65
SVM decision value -0.04
SVM RNA-class probability 0.512826
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16036144 93 - 23771897
-UGCCUGGCAAUUAGGCACAC--AAAU-------GAUGUAUCUCC-------CAAC----------CAUACUUACAUCCAUAUCGAUGUGCACCACGCCCGUUGAUCUGCGCUUCGGCUU
-((((((.....))))))...--....-------((((((.....-------....----------......))))))((.(((((((.((.....)).))))))).)).((....)).. ( -23.36)
>DroSec_CAF1 6735 93 - 1
-UGCCUGGCAAUUAGGCACAC--AAAU-------GAUGUAUCUCC-------CAAC----------CAUACUUACAUCCAUAUCGAUGUGCACCACGCCCGUUGAUCUGCGCUUCGGCUU
-((((((.....))))))...--....-------((((((.....-------....----------......))))))((.(((((((.((.....)).))))))).)).((....)).. ( -23.36)
>DroMoj_CAF1 4932 102 - 1
-GGCCUGGCAAUUAGC-AGACUGAGAUGCUAAGAGAUAUAG------AGAAUGAGA----------UUCACUUACAUCCAUAUCGAUAUGCACCACGCCCGUGGAUCUGCGCUUGGGCUU
-((((..(......((-(((......(((.....(((((.(------(...((((.----------....))))..)).))))).....)))((((....)))).)))))..)..)))). ( -28.90)
>DroAna_CAF1 3702 111 - 1
CUGCCUGGCAAUUAGGCACGA--AAAU-------GAUGUAUCUUUAACGUAUCAGCAUCAGUUAUAAAUACUCACAUCCAUAUCGAUGUGCACCACGCCGGUGGAUCUGCGCUUCGGCUU
.((((((.....))))))...--...(-------((((..(.....)..)))))(((...............((((((......))))))..((((....))))...)))((....)).. ( -26.30)
>DroEre_CAF1 6878 93 - 1
-UGCCUGGCAAUUAGGCGCAC--AAAU-------GAUGUAUCUCC-------CAGC----------CAUACUUACAUCCAUAUCGAUGUGCACCACGCCCGUUGAUCUGCGCUUCGGCUU
-.(((((.....)))))(((.--....-------((((((.....-------....----------......))))))...(((((((.((.....)).))))))).)))((....)).. ( -24.66)
>DroYak_CAF1 29699 93 - 1
-UGCCUGGCAAUUAGGCGCCC--AAAU-------GAUGUAUCUCC-------CAGC----------CAUACUUACAUCCAUAUCGAUGUGCACCACGCCCGUUGAUCUGCGCUUCGGCUU
-.(((((.....)))))(((.--....-------((((((.....-------....----------......))))))((.(((((((.((.....)).))))))).))......))).. ( -23.56)
>consensus
_UGCCUGGCAAUUAGGCACAC__AAAU_______GAUGUAUCUCC_______CAGC__________CAUACUUACAUCCAUAUCGAUGUGCACCACGCCCGUUGAUCUGCGCUUCGGCUU
..(((.(((.........................((((((................................))))))((.(((((((.((.....)).))))))).)).)))..))).. (-16.20 = -17.20 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:35 2006