| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,032,762 – 16,032,857 |
| Length | 95 |
| Max. P | 0.808929 |
| Location | 16,032,762 – 16,032,857 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.74 |
| Mean single sequence MFE | -18.35 |
| Consensus MFE | -13.73 |
| Energy contribution | -13.78 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16032762 95 - 23771897 AUACUGCGAUCGAUCACGAACGAAUAAUAAUAAUAAUAAUCAAACGGGAGCCAACGUACGCUAAAUGAGCA--UUGAUUGAUCGAUGAGACUGGAUC ...((.((((((((((...........................(((........)))..(((.....))).--.))))))))))...))........ ( -18.00) >DroVir_CAF1 1415 77 - 1 ------CGUUCAGUUUUGAUUG-UUAA---------AAAUUG--CAGCUGAACACGCAGGCUAAAUGAGUGCGCUGAUUGAUUGAUC-GACUG-AUU ------.((((((((.(((((.-....---------.)))))--.)))))))).((((..(.....)..)))).(((((....))))-)....-... ( -19.00) >DroSec_CAF1 3420 82 - 1 AUACUGCGAUCGAUCACGAACGAAUAAUAA---UAAUAAUCAAACGGGAGCCAACGUACGCUAAAUGAGCA--UUGAUUGAUCGAUG---------- ......((((((((((..............---..........(((........)))..(((.....))).--.))))))))))...---------- ( -17.90) >DroSim_CAF1 933 92 - 1 AUACUGCGAUCGAUCACGAACGAAUAAUAA---UAAUAAUCAAACGGGAGCCAACGUACGCUAAAUGAGCA--UUGAUUGAUCGAUGAGACUGGAUC ...((.((((((((((..............---..........(((........)))..(((.....))).--.))))))))))...))........ ( -18.00) >DroEre_CAF1 3532 86 - 1 AUACUGCGAUCAAUCACGAACGAAUAA---------UAAUCAAACGGGUGGCAACGUACGCUAAAUGAGCA--UUGAUUGAUCGAUGAGACUGGAUC ...((.((((((((((...........---------.........(..((....))..)(((.....))).--.))))))))))...))........ ( -19.60) >DroYak_CAF1 26312 85 - 1 AUACUGCGAUCGAUCACGAACGAAUAA---------UAAUCAAA-GAGUGGCAACGUACGCUAAAUGAGCU--UUGAUUGAUCGAUGAGACUGGAUC ........(((((((.(....).....---------.(((((((-(..((((.......))))......))--)))))))))))))........... ( -17.60) >consensus AUACUGCGAUCGAUCACGAACGAAUAA_________UAAUCAAACGGGAGCCAACGUACGCUAAAUGAGCA__UUGAUUGAUCGAUGAGACUGGAUC ......((((((((((...........................(((........)))..(((.....)))....))))))))))............. (-13.73 = -13.78 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:34 2006