Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,025,240 – 16,025,347 |
Length | 107 |
Max. P | 0.681082 |
Location | 16,025,240 – 16,025,347 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 96.28 |
Mean single sequence MFE | -37.77 |
Consensus MFE | -35.08 |
Energy contribution | -35.33 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.93 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16025240 107 + 23771897 UUGAUGGUUAACAAAAGCCAAAUGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAA-GCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA ..(((((((..((...((....((((((.((((..((((.((((..(((.....)))))))...))))..))))..-(....)))))))..)).))..)))))))... ( -37.20) >DroSec_CAF1 24969 107 + 1 UUGAUGGUUAACAAAAGCCAAAUGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAA-GCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA ..(((((((..((...((....((((((.((((..((((.((((..(((.....)))))))...))))..))))..-(....)))))))..)).))..)))))))... ( -37.20) >DroSim_CAF1 33631 108 + 1 UUGAUGGUUAACAAAAGCCAAAUGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAAGGCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA ....(((((......)))))....((((.((((..((((.((((..(((.....)))))))...))))..))))..))))((((((.(((...)))...))))))... ( -37.10) >DroEre_CAF1 28024 103 + 1 UUGAUGGUUAAGAAA-GC---GGGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAA-GCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA ..(((((((.(((..-.(---..(((((.((((..((((.((((..(((.....)))))))...))))..))))..-(....)))))).)..)))...)))))))... ( -39.60) >consensus UUGAUGGUUAACAAAAGCCAAAUGGGCCAAAUGGAGCUUGGCGCCUGGCAAACUGCCGCGUAAUGAGCCACGUUAA_GCUGGCGGCCCAGAGUCUGAAAGCCGUCUCA ..(((((((.......((....((((((.((((..((((.((((..(((.....)))))))...))))..))))...(....)))))))..)).....)))))))... (-35.08 = -35.33 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:33 2006