Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 31,221 – 31,322 |
Length | 101 |
Max. P | 0.642174 |
Location | 31,221 – 31,322 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.18 |
Mean single sequence MFE | -27.48 |
Consensus MFE | -20.04 |
Energy contribution | -21.27 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.73 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 31221 101 - 23771897 AGGCAGGAUAAGUGCAU--UUUGUCUGGUCUGCAUUUAUGUGUGAUGAUGGAAGAUGGAGGGCAAACAUGGAUUUUCUG-AGGUCAUCGUUAGCAUC--GCUAACA ((((.(((((((.....--))))))).))))((((....))))(((((((((((((....(.....)....))))))).-..))))))((((((...--)))))). ( -27.10) >DroSec_CAF1 20370 106 - 1 UAGCAGGAUAAGUGCAGGAUAAGUCUGGUCUGCAUUUAUAUGUGAAGAUGGAAGAUUGAGGGCAAAGAUGGAUUUUUCGUAGUCCAUCGCUAGCAUGUAAUAAACA ..(((..((((((((((..((....))..)))))))))).))).............((..(((...((((((((......)))))))))))..))........... ( -27.90) >DroSim_CAF1 21964 104 - 1 UAGUAGGAUAAGUGCAU--UUUGUCUGGUCUGCAUUUAUAUGUGAAAAUGGAAGAUUGAGGGCAAAGAUGGAUUUUUCGUAGUCCAUCGCUAGCAUGUAAUAAACA ..((.......((((..--(((((((.((((.(((((........)))))..))))...)))))))((((((((......))))))))....)))).......)). ( -27.44) >consensus UAGCAGGAUAAGUGCAU__UUUGUCUGGUCUGCAUUUAUAUGUGAAGAUGGAAGAUUGAGGGCAAAGAUGGAUUUUUCGUAGUCCAUCGCUAGCAUGUAAUAAACA ...........((((....(((((((.((((.(((((........)))))..))))...)))))))((((((((......))))))))....)))).......... (-20.04 = -21.27 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:44 2006