| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,020,864 – 16,020,962 |
| Length | 98 |
| Max. P | 0.886750 |
| Location | 16,020,864 – 16,020,962 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 91.75 |
| Mean single sequence MFE | -29.58 |
| Consensus MFE | -23.36 |
| Energy contribution | -23.56 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16020864 98 - 23771897 --AGUGAAGCAAAUAGCCGCAGGUU---GCGGCCGCACUUGCACCGCAAACAAUGUGGCA---GGUAAUUCAAAACGUUUGCACUG--UUCCCAUUGUUAUUAUUA---UU --.(((..((((...(((((.....---))))).....))))..))).(((((((.((((---(((((..........)))).)))--..))))))))).......---.. ( -28.30) >DroSec_CAF1 20758 100 - 1 --AGUGAAGCAAAUAGCCGCAGGUU---GCGGCCGCACUUGCACCGCAAACAAUGUGGCA---GGUAAUUCAAAACGUUUGCACUGUGUUCCCAUUGUUAUUAUUA---UU --(((((.((((((.((((((..((---((((..((....)).))))))....)))))).---((....)).....))))))((.(((....))).))..))))).---.. ( -28.20) >DroSim_CAF1 29338 100 - 1 --AGUGAAGCAAAUAGCCGCAGGUU---GCGGCCGCACUUGCACCGCAAACAAUGUGGCA---GGUAAUUCAAAACGUUUGCACUGUGUUCCCAUUGUUAUUAUUA---UU --(((((.((((((.((((((..((---((((..((....)).))))))....)))))).---((....)).....))))))((.(((....))).))..))))).---.. ( -28.20) >DroEre_CAF1 23850 103 - 1 UCGUUGAAGCAAAUAGCCGCAGGUUGCUGCGGCCGCACUUGCACCGCAAACAAUGUGGCA---GGUAAUUCAAAACGUUUGCACUG--UUCCCAUUGUUAUUAUUA---UU ........((.....(((((((....))))))).((....))...)).(((((((.((((---(((((..........)))).)))--..))))))))).......---.. ( -30.30) >DroAna_CAF1 21367 106 - 1 --AGUGAGGCAAAUAGCCGCAGGUU---GCGGUCGCACUUGCACCGCAUACAUUGUGGCAGCCGGUAAUUCAAAACGUUUGCACUCUUUUCCCAUUGUUAUUAUUAUUAUU --...(((((((((.((((((((((---(((((.((....)))))))).)).)))))))....((....)).....)))))).)))......................... ( -32.90) >consensus __AGUGAAGCAAAUAGCCGCAGGUU___GCGGCCGCACUUGCACCGCAAACAAUGUGGCA___GGUAAUUCAAAACGUUUGCACUGU_UUCCCAUUGUUAUUAUUA___UU ........((((((.((((((.(((...((((..((....)).)))).)))..)))))).....((........))))))))............................. (-23.36 = -23.56 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:22 2006