Locus 5997

Sequence ID 3L_DroMel_CAF1
Location 16,019,150 – 16,019,252
Length 102
Max. P 0.740394
window9592

overview

Window 2

Location 16,019,150 – 16,019,252
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.21
Mean single sequence MFE -30.50
Consensus MFE -17.66
Energy contribution -18.85
Covariance contribution 1.19
Combinations/Pair 1.09
Mean z-score -2.25
Structure conservation index 0.58
SVM decision value 0.45
SVM RNA-class probability 0.740394
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16019150 102 + 23771897
GGUUGCAUUUGCAGCAGGUGCAAUUUCCAGUUAAUUAA---AUGUG--------------AAUAUUCACACUGCAUCCCCUAUCACCAGGGAUUGAUUUC-CCACUUUAGAAGGCGGCUA
((((((...(((((..((........))..........---.((((--------------(....)))))))))).............((((......))-))..........)))))). ( -25.00)
>DroSec_CAF1 19110 103 + 1
GGUUGCAUUUGCAGCAGGUGCAAUAUUCAGUUAAUUAA---AUGUG--------------AAUAUUCACACUGCAUCCCCUGGCACCAGGGAUUGAUUUCCCCACUUUAGAAGGCGGCUA
((((((.......(((((((.(((((((((((.....)---)).))--------------))))))))).))))...(((((....)))))......................)))))). ( -32.40)
>DroSim_CAF1 27688 103 + 1
GGUUGCAUUUUUAGCAGGUGCAAUAUUCAGUUAAUUAA---AUGUG--------------AAUAUUCACACUGCAUCCCCUGGCACCAGGGAUUGAUUUCCCCACUUUAGAAGGCGGCUA
((((((.(((((((((((((.(((((((((((.....)---)).))--------------))))))))).))))...(((((....)))))................)))))))))))). ( -34.20)
>DroEre_CAF1 22075 116 + 1
GG-UGCGCUUGCAUCAGGUGCAAUGUCCAGUUAAUUAAUGUAUGUACAUACAUAUGCACAUAUAUUCACACUGCAUCCCCUUGCAACAGGGAUUGAUUUCCA---UAUAGAAGGGAGCUA
((-(((....))))).((((((.(((..........(((((((((.(((....))).))))))))).))).))))))(((((.(.....(((......))).---....))))))..... ( -30.40)
>consensus
GGUUGCAUUUGCAGCAGGUGCAAUAUCCAGUUAAUUAA___AUGUG______________AAUAUUCACACUGCAUCCCCUGGCACCAGGGAUUGAUUUCCCCACUUUAGAAGGCGGCUA
((((((.......(((((((.(((((...................................)))))))).))))...(((((....)))))......................)))))). (-17.66 = -18.85 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:21 2006