Locus 5996

Sequence ID 3L_DroMel_CAF1
Location 16,017,828 – 16,017,919
Length 91
Max. P 0.866657
window9591

overview

Window 1

Location 16,017,828 – 16,017,919
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 93.77
Mean single sequence MFE -15.77
Consensus MFE -15.53
Energy contribution -14.87
Covariance contribution -0.66
Combinations/Pair 1.18
Mean z-score -1.77
Structure conservation index 0.98
SVM decision value 0.85
SVM RNA-class probability 0.866657
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16017828 91 + 23771897
AGAGAGAGAGAGCGCGAAAGGGAGAAUGAUAAACAAAGUGUAAAAAAAACAAGCGGCUGCUAAAAUGCCCGCAAGUGUUUUUAAUUGAUAU
.......((((((((.......................(((.......))).((((..((......))))))..))))))))......... ( -15.60)
>DroSim_CAF1 26306 89 + 1
AGA--GAGAGAGCGCGAAAGGGAGAAUGAUAAACAAAGUGUAAAAAAAACAAGCGGCUGCUAAAAUGCCCGCAAGUGUUUUUAAUUGAUAU
...--..((((((((.......................(((.......))).((((..((......))))))..))))))))......... ( -15.60)
>DroEre_CAF1 20912 91 + 1
AAAUAGAGAGAGCGCGAAAGGAAGAAUGAUAAACAAAGUGUAAAAAAAACAAGCGGCUGUAAAAAUGCUCGCAAGUGUUUUCAAUUGAUAU
.......((((((((.......................(((.......))).(((((.........)).)))..))))))))......... ( -16.10)
>consensus
AGA_AGAGAGAGCGCGAAAGGGAGAAUGAUAAACAAAGUGUAAAAAAAACAAGCGGCUGCUAAAAUGCCCGCAAGUGUUUUUAAUUGAUAU
.......((((((((.......................(((.......))).((((..((......))))))..))))))))......... (-15.53 = -14.87 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:20 2006