Locus 5994

Sequence ID 3L_DroMel_CAF1
Location 16,014,009 – 16,014,103
Length 94
Max. P 0.892363
window9587 window9588

overview

Window 7

Location 16,014,009 – 16,014,103
Length 94
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 60.95
Mean single sequence MFE -19.38
Consensus MFE -9.16
Energy contribution -9.04
Covariance contribution -0.12
Combinations/Pair 1.40
Mean z-score -1.75
Structure conservation index 0.47
SVM decision value 0.97
SVM RNA-class probability 0.892363
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16014009 94 + 23771897
ACUUGAGUCACUUUGUUGCUUUAAUAAUGAAACCAUGCCAGCAUUAACAAGUAUGACUCAAUAGGGAUAUACCUUAAUU-UUAUCUAUAUAUGCA
..((((((((.(((((((((......(((....)))...))))...)))))..))))))))(((((.....)))))...-............... ( -17.90)
>DroPse_CAF1 32049 92 + 1
UCUACGGCCUGUGGAUCUAUUGCACAGGCAGUACAGG---UACAAGAGUGUACAAACUUCGACAUUAAAGAUUGCUCACCAGGGCAGUGUUUGUA
..(((.(((((((.(.....).))))))).)))...(---((((....)))))............((((.(((((((....))))))).)))).. ( -29.60)
>DroSec_CAF1 13886 92 + 1
ACUUGAGUCACUUUGUUGCUUUAAUAAUGAAACCAUU---GCACUAACAAGUAUGACUCAAUAGGAAUAUGCCUUAAUUUUUAUCUAUAUAUGCA
..((((((((.(((((((......(((((....))))---)...)))))))..)))))))).(((......)))..................... ( -14.90)
>DroSim_CAF1 22086 94 + 1
ACUUGAGUCACUUUGUUGCUUUAAUAAUGAAACCAUGCCAGCACUAACAACUAUGACUCAAUAGGAAUAUACCUUAAUU-UUAUCUAUAUAUGCA
..((((((((..((((((((......(((....)))...))))...))))...)))))))).(((......))).....-............... ( -15.10)
>consensus
ACUUGAGUCACUUUGUUGCUUUAAUAAUGAAACCAUG___GCACUAACAAGUAUGACUCAAUAGGAAUAUACCUUAAUU_UUAUCUAUAUAUGCA
..((((((((..((((((........(((....)))........))))))...)))))))).(((......)))..................... ( -9.16 =  -9.04 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 16,014,009 – 16,014,103
Length 94
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 60.95
Mean single sequence MFE -19.20
Consensus MFE -9.98
Energy contribution -8.86
Covariance contribution -1.12
Combinations/Pair 1.50
Mean z-score -1.18
Structure conservation index 0.52
SVM decision value 0.22
SVM RNA-class probability 0.638687
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16014009 94 - 23771897
UGCAUAUAUAGAUAA-AAUUAAGGUAUAUCCCUAUUGAGUCAUACUUGUUAAUGCUGGCAUGGUUUCAUUAUUAAAGCAACAAAGUGACUCAAGU
...............-.....(((......))).(((((((((..((((...((((...(((((...)))))...)))))))).))))))))).. ( -18.10)
>DroPse_CAF1 32049 92 - 1
UACAAACACUGCCCUGGUGAGCAAUCUUUAAUGUCGAAGUUUGUACACUCUUGUA---CCUGUACUGCCUGUGCAAUAGAUCCACAGGCCGUAGA
.........(((...((((.((((.((((......)))).)))).))))...)))---....(((.(((((((.........))))))).))).. ( -23.00)
>DroSec_CAF1 13886 92 - 1
UGCAUAUAUAGAUAAAAAUUAAGGCAUAUUCCUAUUGAGUCAUACUUGUUAGUGC---AAUGGUUUCAUUAUUAAAGCAACAAAGUGACUCAAGU
.....................(((......))).(((((((((..(((((.((..---((((((...))))))...))))))).))))))))).. ( -16.50)
>DroSim_CAF1 22086 94 - 1
UGCAUAUAUAGAUAA-AAUUAAGGUAUAUUCCUAUUGAGUCAUAGUUGUUAGUGCUGGCAUGGUUUCAUUAUUAAAGCAACAAAGUGACUCAAGU
...............-.....(((......))).(((((((((.((((((((((.(((.......))).)))))..)))))...))))))))).. ( -19.20)
>consensus
UGCAUAUAUAGAUAA_AAUUAAGGUAUAUUCCUAUUGAGUCAUACUUGUUAGUGC___CAUGGUUUCAUUAUUAAAGCAACAAAGUGACUCAAGU
.....................(((......))).(((((((((..(((((...(((...................)))))))).))))))))).. ( -9.98 =  -8.86 +  -1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:17 2006