Locus 5991

Sequence ID	3L_DroMel_CAF1
Location	16,000,640 – 16,000,731
Length	91
Max. P	0.679136

overview

Window 0

Location	16,000,640 – 16,000,731
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	84.17
Mean single sequence MFE	-14.36
Consensus MFE	-10.24
Energy contribution	-9.92
Covariance contribution	-0.32
Combinations/Pair	1.12
Mean z-score	-1.79
Structure conservation index	0.71
SVM decision value	0.30
SVM RNA-class probability	0.679136
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16000640 91 - 23771897
UACAU--UUCUCAUCCGUGCAUUUCCACAUACAUAUGUAUGUAUCUCGUUACCCGGCGACAAUUGAAUCAACCAUUUUCGCCCCCGCAACGCC
.....--........(((((......((((((....))))))............(((((.(((.(......).))).)))))...)).))).. ( -17.50)
>DroSec_CAF1 877 83 - 1
UACAU--UUCUCAUCCGUGCAUUUCCACAU--------AUGUAUCUCGUUAGCCGGCGACAAUUGAAUCAACCAUUUUUGCCCCCGCAACGCC
.....--.........((((((........--------))))))..((((.((.(((((.(((.(......).))).)))))...)))))).. ( -12.50)
>DroSim_CAF1 8543 83 - 1
UACAU--UUCUCAUCCGUGCAUUUCCACAU--------AUGUAUCUCGUUAGCCGGCGACAAUUGAAUCAACCAUUUUCGCCCCCGCAACGCC
.....--.........((((((........--------))))))..((((.((.(((((.(((.(......).))).)))))...)))))).. ( -14.60)
>DroEre_CAF1 2028 79 - 1
UACAU--------UCCGUGCAUUUCCACAUACG------AGUAUCUCGUUCCCCGGCGACAAUUGAAUCAACCAUUUUCGCCCCCGCAGCGCC
.....--------...((((..........(((------((...))))).....(((((.(((.(......).))).)))))......)))). ( -16.40)
>DroYak_CAF1 24709 80 - 1
UACUUGAUACAUAUCUGUGCACUUCCACAC------------AUCUCGUUC-CCGGCGACAAUUGAAUCAACCAUUUUCGCCCCCGCAACGCC
...............((((........)))------------)...(((((-..(((((.(((.(......).))).)))))...).)))).. ( -10.80)
>consensus
UACAU__UUCUCAUCCGUGCAUUUCCACAU________AUGUAUCUCGUUACCCGGCGACAAUUGAAUCAACCAUUUUCGCCCCCGCAACGCC
................(((......)))..................((((....(((((.(((.(......).))).))))).....)))).. (-10.24 =  -9.92 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:10 2006