| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,997,904 – 15,998,024 |
| Length | 120 |
| Max. P | 0.646068 |
| Location | 15,997,904 – 15,998,024 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.09 |
| Mean single sequence MFE | -21.17 |
| Consensus MFE | -17.87 |
| Energy contribution | -17.99 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15997904 120 + 23771897 UUUGUUAGCGUUCUUCAAAUGAACUGGUUAUCAUUUUCAAAAUGAAAUGAUGAAAUCGACCAAUAUUUGAAACAGGAAACCAAUCCAAUAAACCCGACAAAAUAAUUAUAUGCAAACUCU (((((..(.(((.((((((((...(((((((((((((......))))))))......))))).))))))))...(((......)))....))))..)))))................... ( -21.20) >DroSim_CAF1 5836 114 + 1 UUUGUUAGCGUUGUUCAAAUGAACUGGUUAUCAUUUUCAAAA------GAUGAAAUCGACCAAUAUUUGAAACAGGAAACCAAUCCAAUAAACCCGACAAAAUAAUUAAAUGCAAACUCC ...(((.(((((.((((((((...(((((.((((((.....)------)))))....))))).))))))))...(((......)))......................))))).)))... ( -20.80) >DroYak_CAF1 21553 113 + 1 UUUGUUAGCGUUGUUCAAAUGAACUGGUUAUCAUUUUCAAAA------GAUGAAAUCGACCAAUGUUUGAAGAAGGAAGCCAAUCCAAUAAACCCGA-AAAAUAAUUAAAUGCAAACUCU ...(((.(((((((((....))))(((((.((.((((((((.------..((........))...)))))))).)).)))))...............-..........))))).)))... ( -21.50) >consensus UUUGUUAGCGUUGUUCAAAUGAACUGGUUAUCAUUUUCAAAA______GAUGAAAUCGACCAAUAUUUGAAACAGGAAACCAAUCCAAUAAACCCGACAAAAUAAUUAAAUGCAAACUCU ...(((.(((((.((((((((...(((((.(((((.............)))))....))))).))))))))...(((......)))......................))))).)))... (-17.87 = -17.99 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:09 2006