| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,996,934 – 15,997,031 |
| Length | 97 |
| Max. P | 0.801538 |
| Location | 15,996,934 – 15,997,031 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 88.24 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -16.89 |
| Energy contribution | -16.67 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.801538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15996934 97 + 23771897 GUAAAUAGGCGCCCUGUAUAUAUAUAGUUUGUAGGUGGGGCCGCUCUGUACAUAUUACAUAAUACCACCCAAAAAAAAAACACACACACACUCACAU ((((((((((((((..(...((((.....)))).)..))).))).)))).....))))....................................... ( -17.50) >DroSim_CAF1 4896 95 + 1 GUAAAUAGGCGCCCUGUAUAUAUAUAGUUUGUAGGUGGGGCCGCUCUGUACAUAUUACAUAAUACCGCCCAAAAAAAAAACACA--CACACUCACAU ((((((((((((((..(...((((.....)))).)..))).))).)))).....))))..........................--........... ( -17.50) >DroYak_CAF1 20623 85 + 1 GUAAAUAGGCGCCCCUUAUAUAUAUAGUUUGUAGGUGGGGCCGCUCUGUAAAUAUUACAUAAUACCACCCCAA----------A--CACACUCACAU (((((((((((((((...((((.......))))...)))).))).)))).....))))...............----------.--........... ( -18.40) >consensus GUAAAUAGGCGCCCUGUAUAUAUAUAGUUUGUAGGUGGGGCCGCUCUGUACAUAUUACAUAAUACCACCCAAAAAAAAAACACA__CACACUCACAU (((((((((((((((...((((.......))))...)))).))).)))).....))))....................................... (-16.89 = -16.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:08 2006