Locus 5987

Sequence ID 3L_DroMel_CAF1
Location 15,993,921 – 15,994,026
Length 105
Max. P 0.893269
window9573

overview

Window 3

Location 15,993,921 – 15,994,026
Length 105
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 86.75
Mean single sequence MFE -14.13
Consensus MFE -13.60
Energy contribution -13.93
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.96
SVM decision value 0.98
SVM RNA-class probability 0.893269
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15993921 105 - 23771897
UCUUCCCCC-CCCUUUUUUUUCUCUCUCUCUCUCUUACACACAUCAAUCAAAUGAGCUAUCUGGCGAUUUGCUUCGUCGUUUCGCUGAUUCUCGACUUCGAGUUUG
.........-........................................(((.(((.(..((((((......))))))..).))).)))((((....)))).... ( -15.30)
>DroSim_CAF1 1909 100 - 1
UCUUUUCCCCCCCUUUUUUUU------CUCUCUCUUACACACAUCAAUCAAAUGAGCUAUCUGGCGAUUUGCCUCGUCGUUUCGCUGAUUCUCGACUUCGAGUUCG
.....................------.......................(((.(((.(..((((((......))))))..).))).)))((((....)))).... ( -14.50)
>DroYak_CAF1 17587 101 - 1
UCUUUUCACU-C---UUUUUUC-CCCUCUUUUUUUUACACACAUCAAUCAAAUGAGCUAUCUGGCGAUUUGCUUCGUCGUUUCGCUGAUUCUCGACUUCGACUUCG
..........-.---.......-...........................(((.(((.(..((((((......))))))..).))).))).(((....)))..... ( -12.60)
>consensus
UCUUUUCCC_CCCUUUUUUUUC_C_CUCUCUCUCUUACACACAUCAAUCAAAUGAGCUAUCUGGCGAUUUGCUUCGUCGUUUCGCUGAUUCUCGACUUCGAGUUCG
..................................................(((.(((.(..((((((......))))))..).))).)))((((....)))).... (-13.60 = -13.93 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:04 2006