| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,990,586 – 15,990,696 |
| Length | 110 |
| Max. P | 0.686375 |
| Location | 15,990,586 – 15,990,696 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.17 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -10.89 |
| Energy contribution | -14.45 |
| Covariance contribution | 3.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15990586 110 + 23771897 --------UAUACCCCUUCGGAUUCCCAUUCCCAUUCCCAUUCCCGCUUG--CCUGCGGCUUCAUUUGAGGCUGCUUCCGAAUUACCUGCGCCUUUGCCAUGCCAGCAAUGCAGUAGCAA --------........((((((................((........))--...((((((((....)))))))).))))))....((((((..((((.......)))).)).))))... ( -26.10) >DroSec_CAF1 19525 111 + 1 AUACCGAAUAUACCCCUUCGGAUUCCCAUU------CCCAUUCCCGCUGG--CCUGCGGCUUCAUUUGAGGCUGCUUCCGAAUUACCUGUGCCUUUGCCAUGCCAGCAAUGCAGUAGCA- ...(((((........))))).........------.........(((((--(..((((((((....))))))))............((.((....)))).))))))..(((....)))- ( -32.20) >DroSim_CAF1 20770 103 + 1 --------UAUACCCCUUCGGAUUCCCAUU------CCCAUUCCCGCUGG--CCUGCGGCUUCAUUUGAGGCUGCUUCCGAAUUACCUGCGCCUUUGCCAUGCCAGCAAUGCAGUAGCA- --------...........(((.......)------)).......(((((--(..((((((((....))))))))............((.((....)))).))))))..(((....)))- ( -28.90) >DroYak_CAF1 18801 86 + 1 --------AANNNNNNNNNNAAUUCUG------------AUUCUGGCCAGGUCCGAUGGCAUCGU--G-------AUCAGAAGCAGUUUAGCCACUGCCAUGGCUA-AAAGCAG----AA --------..............(((((------------(((...((((.......)))).....--)-------)))))))((..((((((((......))))))-)).))..----.. ( -25.60) >consensus ________UAUACCCCUUCGGAUUCCCAUU______CCCAUUCCCGCUGG__CCUGCGGCUUCAUUUGAGGCUGCUUCCGAAUUACCUGCGCCUUUGCCAUGCCAGCAAUGCAGUAGCA_ ................((((((....................((....)).....((((((((....)))))))).))))))........((..((((..((....))..))))..)).. (-10.89 = -14.45 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:01 2006