Locus 5982

Sequence ID 3L_DroMel_CAF1
Location 15,988,476 – 15,988,587
Length 111
Max. P 0.910614
window9564

overview

Window 4

Location 15,988,476 – 15,988,587
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.80
Mean single sequence MFE -28.85
Consensus MFE -26.33
Energy contribution -26.57
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.41
Structure conservation index 0.91
SVM decision value 1.07
SVM RNA-class probability 0.910614
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15988476 111 - 23771897
UUGUUUAGAAUACGCAAAAUAAUAACAAAACUAAUAAUAAACUGCAGGGCAAUGCAAUUUGAGAGAAUCGCGGGCAGCGCUGCAACUGCGACGCCAACUGA--GGCGGUGGCA-------
............(((...........................(((((.((..(((.((((....)))).)))....)).))))).......((((......--)))))))...------- ( -27.10)
>DroSec_CAF1 17492 115 - 1
UUGUUUAGAAUACGCAAAAUAAUAACAAAACUAAUAAUAAACUGCAGGGCAAUGCAAUUUGAGAGAAUCGCGGGCAGCGCUGCAACUGCGACGCCAACUGAGAGGCGGUGGCGGU-----
(((((..................)))))..............(((((.((..(((.((((....)))).)))....)).)))))(((((.(((((........))).)).)))))----- ( -30.67)
>DroSim_CAF1 18630 113 - 1
UUGUUUAGAAUACGCAAAAUAAUAACAAAACUAAUAAUAAACUGCAGGGCAAUGCAAUUUGAGAGAAUCGCGGGCAGCGCUGCAACUGCGACGCCAACUGAGAGGCGGUGGCA-------
............((((......((.......)).........(((((.((..(((.((((....)))).)))....)).)))))..))))..((((.(((.....))))))).------- ( -27.50)
>DroEre_CAF1 18528 112 - 1
UUGUUUAGAAUACGCAAAAUAAUAACAAAACUAAUAAUAAACUGCAGGGCAAUGCAAGUUGAGAGAAUCGCGGGCAGCGCUGCAACUGCGACGCCGA---AGAGGCAGUGGCAA-----U
(((((..................)))))..............(((((.((..(((..((.((.....))))..))))).)))))..(((.(((((..---...))).)).))).-----. ( -27.17)
>DroYak_CAF1 18000 117 - 1
UUGUUUAGAAUACGCAAAAUAAUAACAAAACUAAUAAUAAACUGCAGGGCAAUGCAAGUUGAGAGAAUCGCGGGCAGCGCUGCAACUGCGACGCCGA---AGAGGCAGUGGCAGUUUCAU
.......(((................................(((((.((..(((..((.((.....))))..))))).)))))(((((.(((((..---...))).)).)))))))).. ( -31.80)
>consensus
UUGUUUAGAAUACGCAAAAUAAUAACAAAACUAAUAAUAAACUGCAGGGCAAUGCAAUUUGAGAGAAUCGCGGGCAGCGCUGCAACUGCGACGCCAACUGAGAGGCGGUGGCA_______
(((((..................)))))..............(((((.((..(((.((((....)))).)))....)).)))))..(((.(((((........))).)).)))....... (-26.33 = -26.57 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:55 2006